PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma53g00970.1 | ||||||||
Common Name | ZOSMA_53G00970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | WOX | ||||||||
Protein Properties | Length: 231aa MW: 26404 Da PI: 9.1765 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.6e-20 | 7 | 67 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee+++ r+p+a+++++++++l +++ ++V++WFqN++a++++ Zosma53g00970.1 7 STRWCPTPEQLMILEEMYRTgIRTPNAAQIRQITAHLsyygKIEGKNVFYWFQNHKARDRQ 67 58*****************99*************************************996 PP | |||||||
2 | Wus_type_Homeobox | 120.1 | 9.1e-39 | 6 | 68 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y++G+rtPn+++i++ita+L+ yGkie+kNVfyWFQN+kaR+rqk Zosma53g00970.1 6 PSTRWCPTPEQLMILEEMYRTGIRTPNAAQIRQITAHLSYYGKIEGKNVFYWFQNHKARDRQK 68 589***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.09 | 3 | 68 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.11E-11 | 5 | 71 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.2E-6 | 5 | 72 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.01E-5 | 6 | 69 | No hit | No description |
Pfam | PF00046 | 9.4E-18 | 7 | 67 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-7 | 9 | 67 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MQQPAPSTRW CPTPEQLMIL EEMYRTGIRT PNAAQIRQIT AHLSYYGKIE GKNVFYWFQN 60 HKARDRQKMR RRLSCLQQQQ NGQVLQAQAQ AQAQTLLSHQ IFHLELSPHP PSPSALLPHL 120 HFPYHHHLRR HQPSSHFLHQ TSSGYYNNQQ EPENMIPPPV MNLVCKLEPA PELVYEAPPT 180 NTIGCVNVPY CKPLKTLDLF PTRAENTGSL KDIDRTISSK SSYCSTSTTN * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018684347.1 | 2e-49 | PREDICTED: WUSCHEL-related homeobox 3B-like | ||||
TrEMBL | A0A0K9NZ86 | 1e-171 | A0A0K9NZ86_ZOSMR; WUSCHEL-related homeobox 3B | ||||
STRING | XP_008776170.1 | 2e-48 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 2e-41 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma53g00970.1 |