PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma4g00620.1
Common NameZOSMA_4G00620
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family M-type_MADS
Protein Properties Length: 231aa    MW: 26461.6 Da    PI: 9.3045
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma4g00620.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.45e-151153345
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    i+n+s r++t+ kRr+g+ KK +EL +LCd+  + +i++++++
  Zosma4g00620.1 11 IQNDSARKTTLKKRRQGLKKKVQELGILCDIPTCCVIYGPNDT 53
                    99*************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.2E-18160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.951151IPR002100Transcription factor, MADS-box
CDDcd002666.81E-23286No hitNo description
SuperFamilySSF554551.7E-21395IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003192.1E-141153IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MARKKVKLSW IQNDSARKTT LKKRRQGLKK KVQELGILCD IPTCCVIYGP NDTAPETWPS  60
EKTALMSVIK RYIKTPEIEK TKKTMNQDGF LRTQIDKFTE LKKKIERENE EAKLNTLLYQ  120
CIGGKSMEDL GKEETQNLTN LVDCKLLILR KKIESMRDST SPITGKPIKN FVPGESSDTN  180
REVADGTSMA IDIYDQTNEV MCPPPPATPI LQPPTNYQDW MDYYYFRNQK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLSWIQNDSARKTTLKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NYG61e-169A0A0K9NYG6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.12e-27M-type_MADS family protein