PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma450g00040.1

Common Name

ZOSMA_450G00040

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

ZF-HD

Protein Properties

Length: 335aa MW: 35978.7 Da PI: 6.7907

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma450g00040.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	102	4.1e-32	75	129	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 rY+eClkNhA+ +GghavDGCgEfm++ ge+gt +alkCaAC+CHRnFHR+ev e Zosma450g00040.1 75 GRYRECLKNHAVGIGGHAVDGCGEFMAA-GEDGTLDALKCAACNCHRNFHRKEVLE 129 69***********************9.999******************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	9.0E-24	66	126	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.4E-29	76	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	3.9E-29	76	127	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.489	77	126	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	8.97E-19	216	290	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-31	218	290	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	3.1E-25	229	285	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MDYDDHDDDE EEIGEIPGGC SSYGTPPPPP TQLPNSSSTR PTPSLLTLAK QELTGGGTTS 60 GGGVRKLSTC GNTSGRYREC LKNHAVGIGG HAVDGCGEFM AAGEDGTLDA LKCAACNCHR 120 NFHRKEVLES VGAGLGLMGI TDTATNTGGN TTTTNTPSAF HHPHQPQFSA YYRTPTGYLH 180 HHVPHRMAPP PLALRSSSGG AGSRDEDDMS DPMIGGSEGG GAGGGSSSKK RFRTRFTQEQ 240 KDKMLELAER LGWRMQKHDE GSVQQFCSDT GVPRHVFKVW MHNNKHTLGK SPTATATLIQ 300 QVPQLLHLQE REHLEIVDQQ HHHQQQQQQM GSSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	2e-24	228	287	16	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010939727.1	8e-90	zinc-finger homeodomain protein 2
Swissprot	Q6YXH5	1e-77	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0K9P2X8	0.0	A0A0K9P2X8_ZOSMR; ZF-HD homeobox protein
STRING	XP_008812231.1	1e-84	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	6e-62	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Zosma450g00040.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]