PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma44g00560.1 | ||||||||
Common Name | ZOSMA_44G00560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | G2-like | ||||||||
Protein Properties | Length: 341aa MW: 36402.5 Da PI: 7.1899 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.2 | 5e-30 | 111 | 164 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Zosma44g00560.1 111 RPRLVWTPQLHKRFVDAVSHL-GIKHAVPKTIMQLMSVEGLTRENVASHLQKYRL 164 59*******************.9*******************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.08E-19 | 108 | 168 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.073 | 108 | 167 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-30 | 110 | 169 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.8E-24 | 112 | 164 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.6E-7 | 114 | 163 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MKEEESNWFP RWKEDELPSP EELMPLTQTL ITPDLALAFD IFQTPNSNIN RNLALQHHAP 60 NLSIGGGCVA EHESSEMGGG GGNSGGGGGG GGGGGGGGGG GGEEQARTLK RPRLVWTPQL 120 HKRFVDAVSH LGIKHAVPKT IMQLMSVEGL TRENVASHLQ KYRLYLKRMQ GISSGGVGSH 180 ASVSHSDEQL FASGPIPHHF LTQRPAPVGG GGGPDPFMPF VQVSALQQHH HHQMAAAAAA 240 AHHQQQQHHQ QQQQQQQQQF YHHRHIGSIG STTPNFEHHG NLVPRQAQQG GMQRMVGPLS 300 VGLMPTISSG VSGFGEDSDS GTVAGRDSRR VLTLFPTNDD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 5e-32 | 111 | 167 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019447122.1 | 3e-87 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 5e-57 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A0K9P0U0 | 0.0 | A0A0K9P0U0_ZOSMR; Response regulator 10 | ||||
STRING | XP_008810430.1 | 7e-82 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1620 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05090.1 | 6e-53 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma44g00560.1 |
Publications ? help Back to Top | |||
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