PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma425g00120.1 | ||||||||
Common Name | ZOSMA_425G00120 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | LSD | ||||||||
Protein Properties | Length: 249aa MW: 27331.6 Da PI: 8.3652 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 25.5 | 2.2e-08 | 171 | 194 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+C l sYPr A++V+C++C t Zosma425g00120.1 171 CGSCNELVSYPRWAKLVKCPCCET 194 **********************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.0E-9 | 168 | 198 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.6E-6 | 171 | 194 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:2.20.25.100 | 6.6E-5 | 187 | 234 | IPR023407 | Ribosomal protein S27e, zinc-binding domain |
TIGRFAMs | TIGR01053 | 0.0021 | 207 | 237 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTKSLWVQIC PPRGPIVVYR CSLLKSGKKV VMGGERERAM AGIRQLPGPE ENPNSSPPQS 60 PIEPPGWEKS VSYTVIVESI DSQQSRTQPG ISGLEKKVSF PTEVDVVEIR HSKKPRSSKW 120 DKMPSPPTDS QSLPPFLTTE QSPIKSQMKK PEPASVKAWS PTDCDVGQMV CGSCNELVSY 180 PRWAKLVKCP CCETANVVFD EHEYGTVKCG KCCIWLMYPS VGAAALSVRC STCRFVTEIG 240 DQSMRPPL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P2E1 | 1e-179 | A0A0K9P2E1_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13395 | 25 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-21 | lsd one like 2 |
Link Out ? help Back to Top | |
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Phytozome | Zosma425g00120.1 |