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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zosma425g00120.1 | ||||||||
| Common Name | ZOSMA_425G00120 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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| Family | LSD | ||||||||
| Protein Properties | Length: 249aa MW: 27331.6 Da PI: 8.3652 | ||||||||
| Description | LSD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-LSD1 | 25.5 | 2.2e-08 | 171 | 194 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
Cg+C l sYPr A++V+C++C t
Zosma425g00120.1 171 CGSCNELVSYPRWAKLVKCPCCET 194
**********************87 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| TIGRFAMs | TIGR01053 | 1.0E-9 | 168 | 198 | IPR005735 | Zinc finger, LSD1-type |
| Pfam | PF06943 | 3.6E-6 | 171 | 194 | IPR005735 | Zinc finger, LSD1-type |
| Gene3D | G3DSA:2.20.25.100 | 6.6E-5 | 187 | 234 | IPR023407 | Ribosomal protein S27e, zinc-binding domain |
| TIGRFAMs | TIGR01053 | 0.0021 | 207 | 237 | IPR005735 | Zinc finger, LSD1-type |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 249 aa Download sequence Send to blast |
MTKSLWVQIC PPRGPIVVYR CSLLKSGKKV VMGGERERAM AGIRQLPGPE ENPNSSPPQS 60 PIEPPGWEKS VSYTVIVESI DSQQSRTQPG ISGLEKKVSF PTEVDVVEIR HSKKPRSSKW 120 DKMPSPPTDS QSLPPFLTTE QSPIKSQMKK PEPASVKAWS PTDCDVGQMV CGSCNELVSY 180 PRWAKLVKCP CCETANVVFD EHEYGTVKCG KCCIWLMYPS VGAAALSVRC STCRFVTEIG 240 DQSMRPPL* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A0K9P2E1 | 1e-179 | A0A0K9P2E1_ZOSMR; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP13395 | 25 | 25 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G21610.1 | 2e-21 | lsd one like 2 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Zosma425g00120.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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