PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma391g00090.1
Common NameZOSMA_391G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 270aa    MW: 30443.2 Da    PI: 9.2624
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma391g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.5e-2096145254
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                       +++GVr +  +grW+AeIrdp++ g  kr++lg+++taeeAa a+++ + +l 
  Zosma391g00090.1  96 KFRGVRLRQ-WGRWAAEIRDPNQHG--KRVWLGTYDTAEEAALAYDKSAVRLQ 145
                       89****998.**********95543..********************998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381232.8E-454268IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000186.93E-2895155No hitNo description
SuperFamilySSF541712.03E-2296155IPR016177DNA-binding domain
SMARTSM003802.0E-3496160IPR001471AP2/ERF domain
PROSITE profilePS5103223.69696154IPR001471AP2/ERF domain
PfamPF008479.3E-1396139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2996154IPR001471AP2/ERF domain
PRINTSPR003678.6E-1097108IPR001471AP2/ERF domain
PRINTSPR003678.6E-10120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSGRNSHVKY SEKVLAIGEN GSSKRRRSVR VFFADPEATD SSSEDDEESP SAYCERRRER  60
VKRYVMEINI QVSSSTVGGR KLRKKRKMAG TGSSQKFRGV RLRQWGRWAA EIRDPNQHGK  120
RVWLGTYDTA EEAALAYDKS AVRLQGINAL TNFPIGQVRE KPMIIIPPQQ PLQEMAKTIM  180
IRSVLPEHET ITTKAKESPF RSPTSVLRFG DDISAVDCSS YFGYDANVDM FGLGLDTALS  240
SMDFYHPQKN RWEDEFGELN TDDFSLGSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2194155364ATERF1
3gcc_A2e-2194155364ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P4F10.0A0A0K9P4F1_ZOSMR; Putative Ethylene-responsive transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15640615
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53290.12e-27cytokinin response factor 3