PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma38g00960.1
Common NameZOSMA_38G00960
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 334aa    MW: 37299.1 Da    PI: 5.0754
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma38g00960.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.79.8e-122166146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+WT eEd++l++ v ++G + W++I ++  + R++k+c++rw +
  Zosma38g00960.1 21 KGPWTLEEDKILKEFVGKYGAREWSSIRSKGFLPRSGKSCRLRWVN 66
                     79************************97763367**********87 PP
2Myb_DNA-binding36.31.3e-1177117345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++ eE+e  + + +++G++ W++Ia  +  gRt++++k++w 
  Zosma38g00960.1  77 KFSIEEQETVISLQAKFGNK-WAKIATFLE-GRTDNDVKNFWS 117
                      6889****************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.6861672IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-181969IPR009057Homeodomain-like
SMARTSM007171.5E-112070IPR001005SANT/Myb domain
SuperFamilySSF466897.81E-2720116IPR009057Homeodomain-like
PfamPF002491.3E-102166IPR001005SANT/Myb domain
CDDcd001671.19E-102368No hitNo description
Gene3DG3DSA:1.10.10.601.0E-1670122IPR009057Homeodomain-like
PROSITE profilePS5129415.50873124IPR017930Myb domain
SMARTSM007171.3E-974122IPR001005SANT/Myb domain
PfamPF002492.2E-1077117IPR001005SANT/Myb domain
CDDcd001678.77E-877120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048235Biological Processpollen sperm cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSDRRRSRDV GGGGGGGVLK KGPWTLEEDK ILKEFVGKYG AREWSSIRSK GFLPRSGKSC  60
RLRWVNKLKP NLKSGCKFSI EEQETVISLQ AKFGNKWAKI ATFLEGRTDN DVKNFWSTRK  120
KKMARLQKKT SLLAKKKNLA AGRSEMPLVI QKEECTGECS KTNTEEIDRD CTDNSSSDGE  180
DDGGEDEKIL ITAVETVVQQ KPAPVMNSLP ALPVKQVEDN YDHNSSIPPF NLPPFPQLYI  240
EQFPVLPENT MDFMLKDDPI FQSTTVDSIY DDLRLFELPA MGLGLLDSHT FGDCDVTQSP  300
ENESFLDDFP VDLFEYPEPP TSPPPPPPSP HHS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-221912325128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9P6Y30.0A0A0K9P6Y3_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.17e-54MYB family protein