PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma37g00200.1 | ||||||||
Common Name | ZOSMA_37G00200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ERF | ||||||||
Protein Properties | Length: 255aa MW: 27576.1 Da PI: 4.8396 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.9 | 1.1e-17 | 36 | 85 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+Wv+eIr+p + r +r +lg+f t eAa+a+++a+++l+g Zosma37g00200.1 36 TYRGVRQRT-WGKWVSEIREP---N-RgARLWLGTFNTSLEAAQAYDHAARSLYG 85 69****999.**********8...3.35***********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.47E-25 | 35 | 91 | No hit | No description |
PROSITE profile | PS51032 | 20.415 | 36 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-28 | 36 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.9E-19 | 36 | 93 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-11 | 36 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.9E-28 | 36 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 37 | 48 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 59 | 75 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MESSGGLTEK QKKCPLRRSR KGCMKGKGGP DNSQCTYRGV RQRTWGKWVS EIREPNRGAR 60 LWLGTFNTSL EAAQAYDHAA RSLYGDCARL NLSSAGSCST QLDSDHPDVS RPTKLLKVAD 120 QGNEINDNSS TNTTTCSTNT TTCSSSSSSS PVQSNSSSSL GLLTSKATAT GFDSTAVATS 180 YLGVDDDDDN VFSLLEGSEG RSLWENYINE DYLHWEGMRL NSDISPTKFS WEGDGEELMG 240 FDALQLSWSS TSPI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-15 | 37 | 92 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00519 | DAP | Transfer from AT5G18450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9P539 | 0.0 | A0A0K9P539_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5510 | 34 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40350.1 | 2e-40 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma37g00200.1 |