PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma317g00310.1
Common NameZOSMA_317G00310
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 283aa    MW: 31738.6 Da    PI: 8.3517
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma317g00310.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.2e-09104124526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C+++++ G Ck+Gd+C FaHg
  Zosma317g00310.1 104 ACPDYRK-GSCKRGDSCDFAHG 124
                       7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.92E-598128IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-599125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.854100126IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-6103126IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6104124IPR000571Zinc finger, CCCH-type
SMARTSM0035632134157IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.225134158IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMLGERTHHL SPTIEVPSWP PTSVYHDVSL TSFRRFLPSN DVFSIFSSDT SNSDFACDEF  60
RMYEFKVRRC MKGRSHDWTE CPYAHPGEKA RRRDPRKYHY SGTACPDYRK GSCKRGDSCD  120
FAHGVFECWL HPARYRTQPC KDGIGCRRRV CFFAHTAEQL RVLIQSPKGS SSKTDSYDGS  180
PMRQQKLQHH ISSTPSSPAA DSGGYSSSSM NELLFSMRQL QMSKASTVWD SPSSGSGGLF  240
DGWLEPVERV ESGRDLRAMT AKKVSMESCL GSGMDDISGY LS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028554171.14e-97zinc finger CCCH domain-containing protein 2
SwissprotQ9M0G22e-83C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A0K9P9I00.0A0A0K9P9I0_ZOSMR; Zinc finger CCCH domain-containing protein
STRINGGSMUA_Achr10P27910_0013e-94(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.16e-86C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]