PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma311g00050.1 | ||||||||
Common Name | ZOSMA_311G00050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 233aa MW: 25687 Da PI: 10.3345 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 245.3 | 4.2e-75 | 59 | 232 | 121 | 301 |
GAGA_bind 121 dsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvl.ngvslDestlPvPv 212 +s + +e++++ + + + +++++++ kkr++ +++ +kk+kkkkk +++ +++sa + k+ek+++dlv+ +gvs+D s++P+P+ Zosma311g00050.1 59 PSIPPSTETKNNRNALLGN---DKQTTNQLKKRSSVTNNNKKKKKKKKK-----EEEDDASSATFTGKREKRNLDLVVgEGVSFDFSGVPTPI 143 4444433333333333332...222222333233333333333333333.....333344444466899*******87579************ PP GAGA_bind 213 CsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 CsCtG++rqCYkWG+GGWqS+CCtttiS yPLP+st r+g+R+agrKmS+ga+ klL +La eG dl ++DLk+hWA+HGtnkfvtir Zosma311g00050.1 144 CSCTGVSRQCYKWGAGGWQSSCCTTTISEYPLPMSTSRPGSRLAGRKMSNGAYGKLLHRLAMEGCDLKDAIDLKNHWARHGTNKFVTIR 232 ****************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 4.2E-72 | 1 | 232 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.1E-69 | 78 | 232 | IPR010409 | GAGA-binding transcriptional activator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MDAKERVGIR NWDFSSDQEG FLKMNSCNQG KSSSGLPEGS TDRTSTINVA WVPQRNFLPS 60 IPPSTETKNN RNALLGNDKQ TTNQLKKRSS VTNNNKKKKK KKKKEEEDDA SSATFTGKRE 120 KRNLDLVVGE GVSFDFSGVP TPICSCTGVS RQCYKWGAGG WQSSCCTTTI SEYPLPMSTS 180 RPGSRLAGRK MSNGAYGKLL HRLAMEGCDL KDAIDLKNHW ARHGTNKFVT IR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 85 | 103 | KKRSSVTNNNKKKKKKKKK |
2 | 95 | 103 | KKKKKKKKK |
3 | 97 | 103 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029120039.1 | 2e-69 | protein BASIC PENTACYSTEINE7 | ||||
Swissprot | O82286 | 6e-63 | BPC7_ARATH; Protein BASIC PENTACYSTEINE7 | ||||
TrEMBL | A0A0K9PBT5 | 1e-172 | A0A0K9PBT5_ZOSMR; Protein BASIC PENTACYSTEINE7 | ||||
STRING | XP_010261623.1 | 2e-67 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP20777 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35550.4 | 7e-62 | basic pentacysteine 7 |
Link Out ? help Back to Top | |
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Phytozome | Zosma311g00050.1 |