PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G35550.4
Common NameATBPC7, BBR, BPC7, T32F12.7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family BBR-BPC
Protein Properties Length: 226aa    MW: 24813.4 Da    PI: 10.5062
Description basic pentacysteine 7
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G35550.4genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind280.29.4e-862722693301
    GAGA_bind  93 salpvgvqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderska 189
                   +  +++ ++++t+ id +q+       ++a++ +  +++l  +pi++++++++++k+k+ +q+++k++++k ++kk+  ++s+k++k++s  +++k+
  AT2G35550.4  27 AHWLHSCIAVPKTTGIDLSQE-------PPAEGvMVPQSHLFPPPIRDSRNDTETVKQKSVNQSPSKALKPKPQRKKR--SVSNKSKKTPSI-PETKR 114
                  344456777888888887666.......67777889999***********************************9999..788899999998.699** PP

    GAGA_bind 190 ekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkd 287
                  ekk++d++++  s+D+s++P+PvCsCtG++r+CYkWG+GGWqS+CCt++iS+yPLP+st+r+gaR+agrKmS+ga+ klL++La+eGydls+p+DLk+
  AT2G35550.4 115 EKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLARLADEGYDLSHPLDLKN 212
                  ************************************************************************************************** PP

    GAGA_bind 288 hWAkHGtnkfvtir 301
                  hWA+HGtnkfvti+
  AT2G35550.4 213 HWARHGTNKFVTIK 226
                  *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.3E-1151226IPR010409GAGA-binding transcriptional activator
PfamPF062179.5E-7065226IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0009005anatomyroot
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0009066anatomyanther
PO:0020100anatomyhypocotyl
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MNSFPAQNLM LSATNANKDS GLRTSNAHWL HSCIAVPKTT GIDLSQEPPA EGVMVPQSHL  60
FPPPIRDSRN DTETVKQKSV NQSPSKALKP KPQRKKRSVS NKSKKTPSIP ETKREKKNLD  120
INIDISSFDT SGVPPPVCSC TGVSRVCYKW GMGGWQSSCC TISISTYPLP MSTTRPGARL  180
AGRKMSNGAY VKLLARLADE GYDLSHPLDL KNHWARHGTN KFVTIK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.376580.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible257369_at0.0
Expression AtlasAT2G35550-
AtGenExpressAT2G35550-
ATTED-IIAT2G35550-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in anthers, in pollen grains, in young rosette, in leaf vasculature, in the lateral and primary roots, in embryo sac, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G35550.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G35550
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0053140.0AC005314.3 Arabidopsis thaliana chromosome 2 clone T32F12 map ve016, complete sequence.
GenBankAY1025500.0AY102550.1 Arabidopsis thaliana hypothetical protein (At2g35550/T32F12.7) mRNA, complete cds.
GenBankAY1168570.0AY116857.1 Arabidopsis thaliana hypothetical protein (At2g35550/T32F12.7) mRNA, complete cds, alternatively spliced.
GenBankAY3805730.0AY380573.1 Arabidopsis thaliana basic pentacysteine 7 (BPC7) mRNA, complete cds.
GenBankBT0263500.0BT026350.1 Arabidopsis thaliana At2g35550 gene, complete cds.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181098.21e-168basic pentacysteine 7
SwissprotO822861e-169BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A178W0001e-167A0A178W000_ARATH; BPC7
STRINGAT2G35550.11e-168(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Xiao YL,Malik M,Whitelaw CA,Town CD
    Cloning and sequencing of cDNAs for hypothetical genes from chromosome 2 of Arabidopsis.
    Plant Physiol., 2002. 130(4): p. 2118-28
    [PMID:12481096]
  2. Santi L, et al.
    The GA octodinucleotide repeat binding factor BBR participates in the transcriptional regulation of the homeobox gene Bkn3.
    Plant J., 2003. 34(6): p. 813-26
    [PMID:12795701]
  3. Meister RJ, et al.
    Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter.
    Plant J., 2004. 37(3): p. 426-38
    [PMID:14731261]
  4. Xiao YL, et al.
    Analysis of the cDNAs of hypothetical genes on Arabidopsis chromosome 2 reveals numerous transcript variants.
    Plant Physiol., 2005. 139(3): p. 1323-37
    [PMID:16244158]
  5. Monfared MM, et al.
    Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis.
    Plant J., 2011. 66(6): p. 1020-31
    [PMID:21435046]