PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma30g00560.1 | ||||||||
Common Name | ZOSMA_30G00560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | GRAS | ||||||||
Protein Properties | Length: 138aa MW: 15496.2 Da PI: 4.7553 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 121 | 1.4e-37 | 1 | 116 | 254 | 374 |
GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 ++rf+e+l y ++fd+ + +e++ + +++l+rei+nv++cega+r+er+e l kWr+r++ aGFk+ +l+++a+kqa++ll +++d Zosma30g00560.1 1 MDRFTESLFYSLTMFDASGGN-----NEQRGLAEVYLQREICNVLCCEGASRTERNEPLTKWRARMSGAGFKTRHLESNAYKQASMLLTLFSGD 89 68***************9988.....5666666777********************************************************** PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 gy vee +g l++gW++rpL+s+SaWr Zosma30g00560.1 90 GYCVEEIDGYLMFGWHNRPLISASAWR 116 **************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 16.72 | 1 | 96 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.8E-35 | 1 | 116 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MDRFTESLFY SLTMFDASGG NNEQRGLAEV YLQREICNVL CCEGASRTER NEPLTKWRAR 60 MSGAGFKTRH LESNAYKQAS MLLTLFSGDG YCVEEIDGYL MFGWHNRPLI SASAWRIRDD 120 VGNSNCSTDE TAQPSQD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-17 | 1 | 118 | 260 | 381 | Protein SCARECROW |
5b3h_A | 2e-17 | 1 | 118 | 259 | 380 | Protein SCARECROW |
5b3h_D | 2e-17 | 1 | 118 | 259 | 380 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010925126.1 | 6e-53 | DELLA protein DWARF8 | ||||
Swissprot | Q9ST48 | 5e-41 | DWRF8_MAIZE; DELLA protein DWARF8 | ||||
TrEMBL | A0A0K9P9Y4 | 5e-99 | A0A0K9P9Y4_ZOSMR; Uncharacterized protein | ||||
STRING | XP_008809331.1 | 1e-50 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP998 | 38 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 1e-41 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma30g00560.1 |
Publications ? help Back to Top | |||
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