PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma305g00120.1
Common NameZOSMA_305G00120
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 351aa    MW: 39518.8 Da    PI: 8.1107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma305g00120.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.4e-06326226
                      -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                      k+ lC+ f+  G C  G++C F+H+
  Zosma305g00120.1  3 KRILCK-FFTHGACLKGEQCEFSHD 26
                      889***.8888*************5 PP
2zf-CCCH26.89.1e-093454526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       C ++ + G C+yG+rC++ H+
  Zosma305g00120.1 34 VCTYYKK-GSCSYGSRCRYDHV 54
                      5999999.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.624128IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-7326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-4328IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-52955IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.7272956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-53153IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-63454IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-53453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.446129156IPR000571Zinc finger, CCCH-type
SMARTSM003560.52130155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.8E-9192256IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578507.07E-9195259No hitNo description
CDDcd001626.60E-4197256No hitNo description
SMARTSM001847.5E-7198255IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.283198256IPR001841Zinc finger, RING-type
PfamPF000979.8E-7198255IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180222231IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.131285314IPR000571Zinc finger, CCCH-type
SMARTSM003560.62285313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MSKRILCKFF THGACLKGEQ CEFSHDWKDE SSNVCTYYKK GSCSYGSRCR YDHVRVPQIK  60
TSTLAASSNS LPRNSASVHI QSAVVASSSS GKDNPSSPSS FHLSASSKPF FPQAADDNVT  120
SQNNAEIQPS DIPICSFAES GNCPHKDSCV HIHGDLCTIC EKHCLHPFRP SEREEHVKSC  180
LKNKKYLEAL RISQDIECCV CLDLVLSKPK LSERKFGILS ECDHSFCISC IRNWRSNSLN  240
VSMDANSTLR TCPICRILSY FVIPSVIWYS SKEEKMEIID TYKAKLRSID CRHFNFGNGA  300
CSFGTSCFYK HAYRDGRLEY VVLRHLNSED GNTVISKDVR LSDFFREMRL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7569312e-35KP756931.1 Zostera japonica microsatellite Zj026 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018673890.11e-162PREDICTED: E3 ubiquitin-protein ligase makorin-like isoform X3
SwissprotE0X9N41e-153C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0K9PCI70.0A0A0K9PCI7_ZOSMR; Zinc finger CCCH domain-containing protein 69
STRINGcassava4.1_010375m1e-159(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53263356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-143C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]