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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Zosma302g00100.1 | ||||||||
| Common Name | ZOSMA_302G00100 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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| Family | GRAS | ||||||||
| Protein Properties | Length: 102aa MW: 11493 Da PI: 4.4206 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 34.2 | 3.6e-11 | 8 | 69 | 2 | 64 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal 64
+ Llec++++++ d la ++L r++e s +gdp++R+a+yf++AL + ++++ + ++ +
Zosma302g00100.1 8 LRSLLECVRVIDN-DPDLAANYLIRIRESTSDYGDPTERMAFYFAKALYSCVSEHHQLCSTSY 69
5789*****7765.999***********************************99444444333 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03514 | 1.2E-8 | 8 | 69 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 102 aa Download sequence Send to blast |
MQFTPLLLRS LLECVRVIDN DPDLAANYLI RIRESTSDYG DPTERMAFYF AKALYSCVSE 60 HHQLCSTSYN SLTSLLPEEL TLCYKDVNAS CGVNESRIDV F* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 2e-13 | 7 | 91 | 4 | 87 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_008785667.1 | 2e-19 | SCARECROW-LIKE protein 7-like | ||||
| Refseq | XP_027075560.1 | 2e-19 | SCARECROW-LIKE protein 7-like | ||||
| Refseq | XP_027179320.1 | 2e-19 | SCARECROW-LIKE protein 7 | ||||
| TrEMBL | A0A0K9PAH6 | 2e-68 | A0A0K9PAH6_ZOSMR; Uncharacterized protein | ||||
| STRING | XP_008785667.1 | 7e-19 | (Phoenix dactylifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G66770.1 | 4e-15 | GRAS family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Zosma302g00100.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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