PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma2g01930.1
Common NameZOSMA_2G01930
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family Trihelix
Protein Properties Length: 310aa    MW: 34385.1 Da    PI: 10.1279
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma2g01930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.69.1e-1523113187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     +W++  + +Li+a  e+  +l rg+l++++Weev++ +       r  +r+ +qCk++++ ++k++k +k +  ++  + +s++p++d+l+a
  Zosma2g01930.1  23 CWSEGATSVLIDAWGERFLDLTRGNLRQKHWEEVADTVnsrktVVRRPHRTDVQCKNRIDTIKKKFKVEKGRVVNE-GGFESQWPFYDRLDA 113
                     7*************************************76554444458999***************999998885.78999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-2521114No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEGKIESGRP PPPNPAMPYR EDCWSEGATS VLIDAWGERF LDLTRGNLRQ KHWEEVADTV  60
NSRKTVVRRP HRTDVQCKNR IDTIKKKFKV EKGRVVNEGG FESQWPFYDR LDALIGNCPP  120
PPLPSSSSAK KKKKKRTEKT LVNDPSHKPL PLALSPPPVS CKRPASEPSL KWGRFSAAAA  180
AAAAARDDDP DSEASSSTGG YAHKEARSYV RKNGGFGRGI GEETMNGNGN ENGSANGNGI  240
MELAMAINKM GEIYEKVEMS RQKQEIEIEK ERLAFNKDME LRKMNLLIKA HVEMRKIKRA  300
KLNSVEGSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135KKKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PD770.0A0A0K9PD77_ZOSMR; Putative Transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.17e-39sequence-specific DNA binding transcription factors