PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma29g00950.1
Common NameZOSMA_29G00950
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 644aa    MW: 73325.9 Da    PI: 8.7378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma29g00950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.7e-07465506240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W++eE e l ++ +++ +g   +W+ I++++g+gRt +++
  Zosma29g00950.1 465 KPWSKEEIEMLRKGMNKYLKGtsrRWEVISEYIGTGRTVEEI 506
                      69************************************9886 PP
2Myb_DNA-binding31.34.8e-10585629244
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 
                      ++W+  E+  lv+a k ++++   +W+++a+ ++ ++t +qck ++
  Zosma29g00950.1 585 DAWSLMEERALVQALKTFPKEtnqRWERVAASVP-NKTMNQCKKKF 629
                      58********************************.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465655.1E-1985172IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1101.1E-1988187IPR001623DnaJ domain
SMARTSM002711.4E-1493168IPR001623DnaJ domain
PfamPF002269.2E-1794173IPR001623DnaJ domain
CDDcd062572.04E-1194165IPR001623DnaJ domain
PROSITE profilePS5007618.0394176IPR001623DnaJ domain
PRINTSPR006256.4E-999117IPR001623DnaJ domain
PRINTSPR006256.4E-9117132IPR001623DnaJ domain
PRINTSPR006256.4E-9148168IPR001623DnaJ domain
PROSITE profilePS500906.214459514IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.5E-5460508IPR009057Homeodomain-like
SMARTSM007172.6E-6463516IPR001005SANT/Myb domain
SuperFamilySSF466896.08E-7465508IPR009057Homeodomain-like
CDDcd001678.97E-5466506No hitNo description
PROSITE profilePS512938.813582637IPR017884SANT domain
SMARTSM007173.9E-11583635IPR001005SANT/Myb domain
SuperFamilySSF466892.81E-9585640IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-7585633IPR009057Homeodomain-like
CDDcd001671.11E-7586633No hitNo description
PfamPF002497.1E-9586629IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MAVSSVLLIC YSPVLVDGKS IIVCSHCGPV KAVNFEPAGH SFHKTALKLS GFYEEEGVEG  60
DNETGSSDEK PQGGFMPSEF YSNKRKKKSG SEQDHYALIG LAHLRFLATE EQIRKSYREM  120
ALKYHPDKQA AILLAEVSEE AKEAKKEEIE THFKSIQEAY GVLTDPVKKR IYDSTDEFDD  180
EIPTDCAPQD FYKVFGPVFM RNARWSVNKP IPLIGEETTP MAEVDAFYNF WYGFKSWREF  240
PHADEYDIED ADSRDHKRWM ERQNAKLGEK ARKEEYARIR TLVDNAYKKD PRIQMRKDEL  300
KAEKQRRKDA KRMAKKLEEE EAQRIAEEEK CRKEEENKKA AQAALVQKRL KEKEKKLLRK  360
ERTRLRTLAS PVVSKKLANV TENDIETICM SFDIDRLRTL CSEAEKKEGV DRAEVLEDAI  420
RSHNKSNKSS EDLGLKLNGG GSYGNSEVKK HMEDPLSSYA KKEEKPWSKE EIEMLRKGMN  480
KYLKGTSRRW EVISEYIGTG RTVEEILKAT KTVLLKKPDS SKAFDSFLEK RKPGPSISSP  540
LTSRLESEGV SIDGGSAAAS SSSSENSSER NPAQNEGPTT NADPDAWSLM EERALVQALK  600
TFPKETNQRW ERVAASVPNK TMNQCKKKFT LMKESFRKKK NAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A2e-2119029520125Zuotin
5dje_B2e-2119029520125Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1625639KKKFTLMKESFRKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0K9PDZ10.0A0A0K9PDZ1_ZOSMR; Chaperone protein DnaJ
STRINGXP_010067661.10.0(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain