PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma291g00060.1
Common NameZOSMA_291G00060
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family WRKY
Protein Properties Length: 704aa    MW: 76009 Da    PI: 5.768
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma291g00060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.6e-31357413259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK+vkgsefprsYY+Ct+ +C+vkkkver+   ++v+ei+Y+g Hnh+
  Zosma291g00060.1 357 DDGYNWRKYGQKHVKGSEFPRSYYKCTHLNCQVKKKVERAP-GGQVTEIIYKGAHNHS 413
                       8****************************************.***************7 PP
2WRKY102.91.8e-32551608158
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                       ldDgy+WrKYGqK+vkg+++prsYY+Cts gC+v+k+ver+++d k+v++tYeg+Hnh
  Zosma291g00060.1 551 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSVGCTVRKHVERASHDLKAVITTYEGKHNH 608
                       59******************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.538351415IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.7E-27354415IPR003657WRKY domain
SMARTSM007743.0E-34356414IPR003657WRKY domain
SuperFamilySSF1182901.14E-24356415IPR003657WRKY domain
PfamPF031062.7E-24357412IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.7E-36536611IPR003657WRKY domain
SuperFamilySSF1182906.54E-28543611IPR003657WRKY domain
PROSITE profilePS5081137.677546611IPR003657WRKY domain
SMARTSM007743.7E-37551610IPR003657WRKY domain
PfamPF031061.6E-24552608IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MAGSDDNLPM LDWPITTPRT QAFLSSILGG DGLLPPENGD EEVPLLATVS SASEKQHNLC  60
IDSIVDREEI DGIRRIQDLG DQSTSIADTS VPNFPPKHHG FRSGLAERMA ARGGFNAPKL  120
NTYQIRSSNN LHSSQPPSDG DAKSHQIPLS PGFSPSAFLD SPVFLFNSLP QPSPTTGKIT  180
LGQGYGSNNT SSAVPGFSNN ISSAVPGFSN NTSSAVPGEP PSEVETKTIS SKPPGEPPAS  240
YFSNASNKVH HHEQSLQILE VISTEEELSN QSESIDIHLQ KQKQQDNDLL SAFSEPSDIK  300
DSSVDYIFDI KPSQFPSMMC SKENSPPPVD QLKSEDQKVE FSSNYAGASV GAKPSDDDGY  360
NWRKYGQKHV KGSEFPRSYY KCTHLNCQVK KKVERAPGGQ VTEIIYKGAH NHSRPPLNRR  420
ISSVAVMSSH SLGAEMQTDV TSSSTSFAPL ENDNFCDPSV SSMCEDIPPR FESSDTLDVS  480
SALSNGGEED NGGTMTCGGG GYGATVGVDN EESELKRRKL ELSAVDMNSS ASRAVREPRV  540
VVQTTSEVDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTSV GCTVRKHVER ASHDLKAVIT  600
TYEGKHNHVV PAARNSCHSS SVISAAAATE TTNASSHKTQ ESLTRFDIPQ TGFSFGLTQP  660
NLTSFAMAGL VPCGPPHMKP HPYLDQPGLF LLPKGEPKDD RCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-35357612878Probable WRKY transcription factor 4
2lex_A2e-35357612878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9FG777e-94WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A0K9PCD00.0A0A0K9PCD0_ZOSMR; Putative WRKY transcription factor 20
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP207538100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-86WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  4. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]