PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma288g00210.1
Common NameZOSMA_288G00210
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 450aa    MW: 49156.9 Da    PI: 6.6484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma288g00210.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.8e-09289336455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L+ l+P +     kK   Ka +L + ++Y++sLq
  Zosma288g00210.1 289 SHSLAERVRREKISERMKFLQNLVPGC-----KKvTGKAVMLDEIINYVQSLQ 336
                       8**************************.....77799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.69E-11283340No hitNo description
SuperFamilySSF474591.57E-16283353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17285354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.243285335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.5E-6289336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-9291341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDREEFTTTS LLDHLNVNYV SLNWDQPSQF ESALSSIVSS PSNQTPQSDN VVIRELIGRL  60
GTICNSSGEI EMSPHSQGYN NSSVNASSYT TPLNSPPKLG LSMSENHYQS LGSISISGNP  120
LPIPATGTAR LSGIVADPGF AERSARFSCF GGRNYNGFPG VYPTPPEASP QLLQINEHIS  180
PKGGCGSQPN DRDEPSVSDH IPVISRSNAR KRKSISKTKP NETSKVLSGD DSHAKNSRSD  240
KSKLEQACSV LESGDGSQER SKESNSKTPE IPRQDYIHVR ARRGQATDSH SLAERVRREK  300
ISERMKFLQN LVPGCKKVTG KAVMLDEIIN YVQSLQRQVE FLSMKLSTVN HRLDLNVENL  360
ISKDIPHSGV PMDLSGPVFP FSQNVMMNGV QSLSHCNLNP LDAASLFGTL WEDDLQSVVQ  420
MGFEQNQETA FSSQLFPGAL PSTHMKVEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028074625.11e-118transcription factor bHLH62-like
TrEMBLA0A0K9PEZ70.0A0A0K9PEZ7_ZOSMR; BHLH transcription factor
STRINGXP_010243164.11e-115(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-80bHLH family protein