PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma288g00100.1 | ||||||||
Common Name | ZOSMA_288G00100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | ERF | ||||||||
Protein Properties | Length: 212aa MW: 24154.1 Da PI: 9.6533 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.9 | 2.2e-12 | 88 | 130 | 3 | 52 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 +GV++ k+ +W A I++ +k+++lg+ g+ eeAa+++++a+ k Zosma288g00100.1 88 MRGVYF--KNMKWQAAIKVE-----KKQIHLGTVGSQEEAARLYDRAAFK 130 79**98..47*********6.....6*********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 9.058 | 75 | 142 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-6 | 87 | 131 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-5 | 87 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-8 | 88 | 133 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-6 | 89 | 132 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MVSLRKRRLL GFLVGTCNSD SQSHDPSNAI ETKQEQAINI SEGDYGSFCL SGSSSSKEGL 60 IQQQPVPEVK KRKRHRRKVV ENREPCNMRG VYFKNMKWQA AIKVEKKQIH LGTVGSQEEA 120 ARLYDRAAFK CGREPNFELS EEEKQELRSF EWDEFLAMTR DAINNKKNQR RISAIKKKKS 180 KTKRPNEEDW GSNPDVKASS DDIDGEETSL S* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 169 | 184 | RRISAIKKKKSKTKRP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018682753.1 | 4e-70 | PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X3 | ||||
Swissprot | Q56XP9 | 4e-44 | ERFL1_ARATH; Ethylene-responsive transcription factor-like protein At4g13040 | ||||
TrEMBL | A0A0K9PEY9 | 1e-155 | A0A0K9PEY9_ZOSMR; Ethylene-responsive transcription factor-like protein | ||||
STRING | GSMUA_Achr6P06510_001 | 1e-67 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7516 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13040.1 | 5e-45 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma288g00100.1 |