PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma288g00090.1
Common NameZOSMA_288G00090
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 443aa    MW: 49077.2 Da    PI: 6.8513
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma288g00090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.42.7e-096384526
                      --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       C+++ rtG C++G +CkF+H+
  Zosma288g00090.1 63 DCPYYIRTGLCRFGMTCKFNHP 84
                      7********************8 PP
2zf-CCCH34.43.8e-11105130227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+++++tGtCk+G +CkF+H++
  Zosma288g00090.1 105 GQPECQYYLKTGTCKFGMTCKFHHPK 130
                       789*********************96 PP
3zf-CCCH35.71.4e-11154176527
                       --SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       +C++++rtG+Ck+G++CkF+H++
  Zosma288g00090.1 154 ECSYYLRTGQCKFGNTCKFHHPQ 176
                       6********************97 PP
4zf-CCCH35.22.1e-11296322127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++ C f+++tG CkyG+ Ck++H++
  Zosma288g00090.1 296 PGEPDCVFYMKTGDCKYGPVCKYHHPK 322
                       5789*********************96 PP
5zf-CCCH406.7e-13342368127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++lC f++r+G+Ck+G++CkF H++
  Zosma288g00090.1 342 PGEPLCIFYSRYGICKFGPNCKFDHPE 368
                       589**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.8875886IPR000571Zinc finger, CCCH-type
SMARTSM003560.0125885IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-56386IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-66384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319103131IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4103130IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-4109130IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-5149176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197149177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6151177IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-9154176IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4155175IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892295323IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6295322IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7297322IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5300325IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-7341368IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.845341369IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10343368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6344369IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4346369IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MGYDGGSRGS GVVAVAVTVM MDGGGSSSFS PQVVDEDAMW EIKMRAKEVM EARPYPERPG  60
ELDCPYYIRT GLCRFGMTCK FNHPINRKLA VATARMEGGY PERKGQPECQ YYLKTGTCKF  120
GMTCKFHHPK EKAGIVGRAQ LNSLGYPIRP SEMECSYYLR TGQCKFGNTC KFHHPQPSNA  180
MVSFRGSPIY PAVQSPTISR GSYLPSPRWQ DHSSYPQMIL PQGLMQVPGW NAYPGQVGSV  240
SSPEYQQQTA GNGQLFGSSR QSESTNTGAH GTFLSHLSGS VPIHSLQNES IFPERPGEPD  300
CVFYMKTGDC KYGPVCKYHH PKERFYHVPD CVLNSSGLPL RPGEPLCIFY SRYGICKFGP  360
NCKFDHPEEN SIYGNSSTDI PMIQLVLDRP TSDNNDIEDL KQESEENSIQ VSTKSDHPDD  420
DDNKTKPTET LISISEPISS FS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008812314.10.0LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ2R4J41e-170C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0K9PCX30.0A0A0K9PCX3_ZOSMR; Zinc finger CCCH domain-containing protein 63
STRINGXP_008812314.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-150zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]