PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma269g00220.1
Common NameZOSMA_269G00220
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 293aa    MW: 33216.8 Da    PI: 5.3937
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma269g00220.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.87e-152168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W  eEd+llv++++  G g+W++ a++ g++Rt+k+c++rw++yl
  Zosma269g00220.1 21 RGPWAIEEDKLLVHYIACNGEGRWNLLAKCSGLKRTGKSCRLRWLNYL 68
                      89********************************************97 PP
2Myb_DNA-binding50.74e-1674117146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+ T eE+ l++d++ ++G++ W++Ia++++ gRt++++k++w++
  Zosma269g00220.1  74 RGNLTLEEQILILDLHSKWGNR-WARIAQHLP-GRTDNEIKNYWRT 117
                       7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.6031668IPR017930Myb domain
SuperFamilySSF466898.99E-2919115IPR009057Homeodomain-like
SMARTSM007178.1E-112070IPR001005SANT/Myb domain
PfamPF002495.3E-132168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-202275IPR009057Homeodomain-like
CDDcd001672.81E-82368No hitNo description
PROSITE profilePS5129424.42469123IPR017930Myb domain
SMARTSM007173.1E-1473121IPR001005SANT/Myb domain
PfamPF002491.5E-1474117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-2376122IPR009057Homeodomain-like
CDDcd001673.41E-1178117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MYVYTTHCHV HTPGSMEEIK RGPWAIEEDK LLVHYIACNG EGRWNLLAKC SGLKRTGKSC  60
RLRWLNYLKP DVKRGNLTLE EQILILDLHS KWGNRWARIA QHLPGRTDNE IKNYWRTRVQ  120
KQAKQLNIDI NSAIFRDVVR YFWLPRLVQG IEMDSNPACC SSSSQVNKFA INSAGDMRRQ  180
LVGILGSLQI PLSPIENTTI SCPNIWANRI TSTNQQQTRE IDNLFWNIDG AIDGDQMSLD  240
GLELIYPGTV APAEPDDITG SLAVLDSSSI MMEDDSLWTE YLDDPEILCD IP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-241812224127MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008797802.12e-80transcription factor MYB62-like
TrEMBLA0A0K9PEP20.0A0A0K9PEP2_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.16e-77myb domain protein 62