PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma267g00390.1 | ||||||||
Common Name | ZOSMA_267G00390 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | WRKY | ||||||||
Protein Properties | Length: 229aa MW: 26221.6 Da PI: 7.0014 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 78.1 | 1e-24 | 107 | 166 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +Dgy+W+KYGqK++ g+++p++Y+rCt++ +C ++k+v+ s+ d++v+++tY geH + Zosma267g00390.1 107 EDGYHWKKYGQKNILGTKHPKGYFRCTYSqsrQCLATKHVQMSDGDQTVFDVTYFGEHSC 166 8**************************998899*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 20.013 | 101 | 165 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-23 | 103 | 166 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.05E-22 | 105 | 166 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.4E-33 | 106 | 168 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-23 | 107 | 166 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MENHLIAEIN NSRAFVKKLQ PLLDQQDLHC LDISSIKSLV NSLTASIENT MTHAQFAIFQ 60 GEQIKPEDTP RVQNRRSKKR IRRSKEKFTR HVKMTVNLAK GLAESLEDGY HWKKYGQKNI 120 LGTKHPKGYF RCTYSQSRQC LATKHVQMSD GDQTVFDVTY FGEHSCFPGE SKNKETVPPD 180 HDVITENASL SFLDTSVLSL PDMSELFCQD YLTLENEFSF DDVNYYLS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-17 | 102 | 166 | 4 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 82 | RRSKKRIRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PGX0 | 1e-172 | A0A0K9PGX0_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1086 | 38 | 131 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11070.2 | 3e-24 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma267g00390.1 |