PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma264g00270.1 | ||||||||
Common Name | ZOSMA_264G00270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | YABBY | ||||||||
Protein Properties | Length: 184aa MW: 20457.5 Da PI: 9.7364 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 217.9 | 3.1e-67 | 4 | 162 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 +++ vCyv+CnfCnt+lavsvP + lf++vtvrCGhC++llsvn+ + q+++ + l+++ + + e ++++ +++++ + s+++ Zosma264g00270.1 4 EIAADFVCYVHCNFCNTVLAVSVPCNNLFNMVTVRCGHCSNLLSVNMGGKLQIIPPHV-LQNNSNMKSPEYGLEHGSSSAKYYHRMSILSQHN 95 567899*******************************************999998765.3444333333333333333333333333333333 PP YABBY 97 sseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ss+ e +r+ p i PPekrqr+Psaynrfikeeiqrika+nPdi+hreafsaaaknWahfP+ihfgl Zosma264g00270.1 96 SSSL------MEKQRIVP-IAPPEKRQRAPSAYNRFIKEEIQRIKANNPDITHREAFSAAAKNWAHFPRIHFGL 162 3322......22233334.89***************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 1.6E-70 | 7 | 162 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.24E-9 | 99 | 155 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.5E-5 | 111 | 156 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 4.64E-6 | 116 | 152 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MSFEIAADFV CYVHCNFCNT VLAVSVPCNN LFNMVTVRCG HCSNLLSVNM GGKLQIIPPH 60 VLQNNSNMKS PEYGLEHGSS SAKYYHRMSI LSQHNSSSLM EKQRIVPIAP PEKRQRAPSA 120 YNRFIKEEIQ RIKANNPDIT HREAFSAAAK NWAHFPRIHF GLTLEAKNQM KSSIAAAAEG 180 GRK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008778120.1 | 1e-73 | protein YABBY 2-like | ||||
Refseq | XP_009792035.1 | 1e-73 | PREDICTED: axial regulator YABBY 5-like isoform X3 | ||||
Swissprot | Q10FZ7 | 4e-61 | YAB2_ORYSJ; Protein YABBY 2 | ||||
TrEMBL | A0A0K9PEQ0 | 1e-134 | A0A0K9PEQ0_ZOSMR; Protein YABBY 2 | ||||
STRING | XP_008778120.1 | 5e-73 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 2e-63 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma264g00270.1 |