PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma255g00110.1 | ||||||||
Common Name | ZOSMA_255G00110 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 393aa MW: 43489.9 Da PI: 6.56 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163.9 | 5.7e-51 | 18 | 157 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyW 83 lppGfrFhPtdeel+++yL+ kv + + i e+d++++ePw+Lp +k +e+ewyfFs +d+ky+tg r+nrat +gyW Zosma255g00110.1 18 LPPGFRFHPTDEELITYYLASKVYNIAagagtssG---SallQIVEIDLNRCEPWELPDVAKMGEREWYFFSLKDRKYPTGLRTNRATGAGYW 107 79********************9887755555432...14436***************8888899**************************** PP NAM 84 katgkdkevlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 katgkd+ev+s+ +++lvg+kktLvfykgrap+gekt+Wv+heyrl Zosma255g00110.1 108 KATGKDREVYSSsthsgSSSLVGMKKTLVFYKGRAPRGEKTKWVLHEYRL 157 ***********9777666666***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-61 | 10 | 180 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.406 | 18 | 180 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-26 | 19 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence Send to blast |
MGDMLWDLIG EDTNRHGLPP GFRFHPTDEE LITYYLASKV YNIAAGAGTS SGSALLQIVE 60 IDLNRCEPWE LPDVAKMGER EWYFFSLKDR KYPTGLRTNR ATGAGYWKAT GKDREVYSSS 120 THSGSSSLVG MKKTLVFYKG RAPRGEKTKW VLHEYRLDGH LANHLFHNKE EWVICRIFHK 180 AVSDQKKIDP FLLNHAYILE PPSSSSSSSS CCFSSSTPFL MHETPNIQAF LQKNTFININ 240 SNNIGSNDNS VMTIGNNNHV ALPINVGPPP LSADPSSISP ANITSLLKSN PNHCLGLVRE 300 TIPVPEQCNV QTLEEDDQFD RSSVLNWTDY PNPHNPWSFD VGIFNSSLYC AGNATTTTTT 360 TTTTVHDMHS LFSRLPPLPT GATLGDSLPL IP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-49 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-49 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-49 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-49 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-49 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-49 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-49 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-49 | 18 | 186 | 20 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00241 | DAP | Transfer from AT1G76420 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PFM3 | 0.0 | A0A0K9PFM3_ZOSMR; Uncharacterized protein | ||||
STRING | Gorai.009G186000.1 | 1e-96 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11237 | 33 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76420.1 | 2e-78 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma255g00110.1 |