PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma249g00200.1 | ||||||||
Common Name | ZOSMA_249G00200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C3H | ||||||||
Protein Properties | Length: 456aa MW: 50257.7 Da PI: 8.0071 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 30.2 | 7.6e-10 | 63 | 88 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C++G +C+++H+p Zosma249g00200.1 63 GQPDCAYYMRTGLCRFGMTCRYNHPP 88 5799********************96 PP | |||||||
2 | zf-CCCH | 38.1 | 2.6e-12 | 109 | 133 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tGtCk+G++CkF+H++ Zosma249g00200.1 109 QPECEYYLKTGTCKFGATCKFHHPR 133 799********************96 PP | |||||||
3 | zf-CCCH | 37.2 | 4.9e-12 | 157 | 180 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C +++rtG+Ck+G++CkF+H++ Zosma249g00200.1 157 VECAYYLRTGQCKFGSTCKFHHPE 180 79********************96 PP | |||||||
4 | zf-CCCH | 37.1 | 5.3e-12 | 318 | 342 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tG Ck+G+ C+F+H++ Zosma249g00200.1 318 EPECQFYMKTGDCKFGPVCRFHHPR 342 799********************96 PP | |||||||
5 | zf-CCCH | 34 | 4.8e-11 | 362 | 387 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C f++r+G+Ck+G +CkF H+ Zosma249g00200.1 362 PGEPVCVFYSRYGICKFGINCKFDHP 387 57899********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 13.666 | 61 | 89 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 61 | 88 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-7 | 64 | 88 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-5 | 65 | 89 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.5E-6 | 106 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.953 | 106 | 134 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.1E-10 | 109 | 133 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-6 | 110 | 135 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.1E-5 | 112 | 134 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 151 | 181 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 6.8E-5 | 153 | 180 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.112 | 153 | 181 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-10 | 157 | 180 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.4E-4 | 159 | 179 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.9E-6 | 315 | 342 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.69 | 315 | 343 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 318 | 343 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 318 | 342 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-4 | 321 | 343 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 359 | 387 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.5E-6 | 361 | 388 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.371 | 361 | 389 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.0E-8 | 363 | 387 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 456 aa Download sequence Send to blast |
MGYDTSVQNI YGGNGASASS ALTEGGGFYY SLNRDIDEEM MWQMNLRMNE EVMEGGPYPE 60 RLGQPDCAYY MRTGLCRFGM TCRYNHPPNR KLAVVAATMR GGYPERIGQP ECEYYLKTGT 120 CKFGATCKFH HPREKAGIAG RGAQLNELGY PMRMNEVECA YYLRTGQCKF GSTCKFHHPE 180 PSNMVRPLHS SIYPTVHSPS TAQQSYPGAL TNWPVARASF IPSPRWQGIS NYAQMILPQE 240 LVQVPGWNPY TGQLGSASPS PSQQQARGNA QYYSSPRQGE MSTAGAPPGS FSSYHIGSVP 300 SGVYGLQRDN VFPERPNEPE CQFYMKTGDC KFGPVCRFHH PRERTISIPD CMLSSLGLPL 360 RPGEPVCVFY SRYGICKFGI NCKFDHPTTV FPYGGAPSYS TDVPIQNFVG SSSLEPVTLT 420 LPLPQGPVDA VETNNKPRRL SSQLTAGDEK PEPKG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008812314.1 | 0.0 | LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein ZFN-like | ||||
Swissprot | Q2R4J4 | 0.0 | C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63 | ||||
TrEMBL | A0A0K9PGR2 | 0.0 | A0A0K9PGR2_ZOSMR; Zinc finger CCCH domain-containing protein 63 | ||||
STRING | XP_008812314.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-155 | zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Zosma249g00200.1 |
Publications ? help Back to Top | |||
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