PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma244g00080.1
Common NameZOSMA_244G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SBP
Protein Properties Length: 456aa    MW: 50813.4 Da    PI: 7.2451
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma244g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP1331e-41166243178
                       --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
               SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                       +Cq+egC+adls ak+yhrrhkvCe+hska+vv+++gl+qrfCqqCsrfh l efDe+krsCr+rLa+hn+rrrk+q+
  Zosma244g00080.1 166 RCQAEGCKADLSGAKHYHRRHKVCEFHSKATVVVANGLQQRFCQQCSRFHVLVEFDEAKRSCRKRLADHNRRRRKPQP 243
                       6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.5E-34161228IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.693164241IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.49E-39165245IPR004333Transcription factor, SBP-box
PfamPF031104.2E-31167240IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MNNTSTSEDD NGYVPSSMLS FVSTMENNAN TSDSKNNKHS QVWDWVDYGN NNHHHQLAAT  60
PTPVVTATPP FLSNAGANPF LDCQSSLLPM PPSNFPFYSP LQPDFQHQHQ PNGLIKMEDC  120
SDMVAVGQIG LNLGHRTYFS SGDTLAIDRL FRRSRGLYQM NQQIPRCQAE GCKADLSGAK  180
HYHRRHKVCE FHSKATVVVA NGLQQRFCQQ CSRFHVLVEF DEAKRSCRKR LADHNRRRRK  240
PQPTTSQSST DPSAPNNSTE TSNDETKQQN QTSMNQISSR QICSSIFFWT TANTGTPISS  300
CTAASAATVC TFATNSMCID SPKDRNHNHH HHHLNHSSSG NDNKVTLSSN GPCLSLGGAE  360
EGNFGFYSTN SYNHQSSRPF VVMSDDDNSH YHHNNNHMST SSSSATYYHH SHHNFFNEAS  420
QSSPVVRPSD QSSDQQQHAN QMQHLGQGLF EVDFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-291672401184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223240KRSCRKRLADHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PJ440.0A0A0K9PJ44_ZOSMR; Uncharacterized protein
STRINGXP_008781929.17e-91(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-52squamosa promoter binding protein-like 8