PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma23g01260.1
Common NameZOSMA_23G01260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 329aa    MW: 37856.7 Da    PI: 4.6108
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma23g01260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.3e-1858111356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      k+++++ eq+++Le+ Fe ++++  e++ +LA+ lgL+ rqV vWFqNrRa++k
  Zosma23g01260.1  58 KKRRLSVEQVKTLEKNFEVENKLEPERKVKLAQDLGLQPRQVAVWFQNRRARWK 111
                      456899***********************************************9 PP
2HD-ZIP_I/II129.21.7e-4157149193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrls eqvk+LE++Fe e+kLeperKv+la++LglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd++k++ ++L +e+++L +elke
  Zosma23g01260.1  57 EKKRRLSVEQVKTLEKNFEVENKLEPERKVKLAQDLGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDTIKNNYDKLVQEKDHLLAELKE 149
                      69***************************************************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-1949115IPR009057Homeodomain-like
PROSITE profilePS5007117.26553113IPR001356Homeobox domain
SMARTSM003891.4E-1656117IPR001356Homeobox domain
PfamPF000467.8E-1658111IPR001356Homeobox domain
CDDcd000863.64E-1658114No hitNo description
Gene3DG3DSA:1.10.10.601.0E-1960120IPR009057Homeodomain-like
PRINTSPR000311.7E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000311.7E-593109IPR000047Helix-turn-helix motif
PfamPF021832.7E-15113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MKRPRNSNSL SSEDTTTVGS FQSILDGLGE EEEDEMMLIM GDDAAIGVGT TSLNSVEKKR  60
RLSVEQVKTL EKNFEVENKL EPERKVKLAQ DLGLQPRQVA VWFQNRRARW KTKQLERDYG  120
VLKANYDTIK NNYDKLVQEK DHLLAELKEL KTKLDGKNSH CLIKEEIVAH EDEYDVKVNK  180
DEMNLHRRSK DVDENENDED DAEKHILAVL YNYKDGLSDS DSSAILNDLS SHSDEGLPNK  240
IHNYDHDEEQ KQLLLADFNY TSSSSTCSQF PHHTVGNGRD DGLSYYHYQL PAHQYQQILP  300
KMEENTFLNG NEFFSDDPSP ELLSNWWE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00587DAPTransfer from AT5G65310Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PJP30.0A0A0K9PJP3_ZOSMR; Homeobox-leucine zipper protein ATHB-16
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.23e-46homeobox protein 5