PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma237g00270.1
Common NameZOSMA_237G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 219aa    MW: 23639.5 Da    PI: 9.6951
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma237g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-174291255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+G+r +k +g+WvAe+r+p   +kr r++lg++ t+  Aaka++ a+  l+g
  Zosma237g00270.1 42 KYRGIRMRK-WGKWVAEVREP---NKRSRIWLGSYSTPIAAAKAYDTAMFHLRG 91
                      8******99.*******9998...337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.2E-3542105IPR001471AP2/ERF domain
PROSITE profilePS5103222.3524299IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-2042101IPR016177DNA-binding domain
CDDcd000185.02E-264299No hitNo description
Gene3DG3DSA:3.30.730.101.9E-294299IPR001471AP2/ERF domain
PfamPF008474.4E-114291IPR001471AP2/ERF domain
PRINTSPR003671.2E-114354IPR001471AP2/ERF domain
PRINTSPR003671.2E-1181101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEKRECCSNS LPSSSSSSPT PTTAYTASHS SETLPCGSQE IKYRGIRMRK WGKWVAEVRE  60
PNKRSRIWLG SYSTPIAAAK AYDTAMFHLR GRSARLNFPM EFADKGVDGS STGGGGVLSS  120
ETIRKKAIEV GTRVDALHVI TTTTTTITAS TTMSVAADTV VRETRENIRL RYPAVRQGGA  180
VAGAFGSEGF RENNKVGKNP DLNQRPSPDC SDEEDAKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1636102875Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PHY51e-160A0A0K9PHY5_ZOSMR; Ethylene-responsive transcription factor
STRINGTraes_2BL_1E57B73B21.57e-49(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06746.14e-37related to AP2 9