PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G06746.1 | ||||||||
Common Name | DEAR5, ERF007, F15N16.2, RAP2-9, RAP2.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 150aa MW: 17199 Da PI: 10.5515 | ||||||||
Description | related to AP2 9 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.2 | 3.5e-17 | 35 | 84 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r +k +g+WvAeIr+p +kr r++lg++ ta Aa+a++ a +l+g AT4G06746.1 35 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYKTAVAAARAYDTAVFYLRG 84 8******99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.97E-28 | 34 | 93 | No hit | No description |
PROSITE profile | PS51032 | 22.366 | 35 | 92 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 35 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-10 | 35 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-21 | 35 | 93 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-36 | 35 | 98 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 74 | 94 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009005 | anatomy | root | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009062 | anatomy | gynoecium | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020100 | anatomy | hypocotyl |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MVIQYKRKQE FPMVKEGMVM TEKPKRNLIS SNEKRYKGIR MRKWGKWVAE IREPNKRSRI 60 WLGSYKTAVA AARAYDTAVF YLRGPSARLN FPEEVFKDGN GGEGLGGDMS PTLIRKKAAE 120 VGARVDAELR LENRMVENLD MNKLPEAYGL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 29 | 94 | 8 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.47204 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G06746 | |||||
AtGenExpress | AT4G06746 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.9). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1 and RAP2.10. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00430 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G06746.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G06746 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB073166 | 0.0 | AB073166.1 Arabidopsis thaliana DNA, chromosome 4 centromere region, BAC clone:F15N16. | |||
GenBank | AY560869 | 0.0 | AY560869.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At4g06746) mRNA, complete cds. | |||
GenBank | BT024689 | 0.0 | BT024689.1 Arabidopsis thaliana At4g06746 mRNA, complete cds. | |||
GenBank | CP002687 | 0.0 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_849340.1 | 1e-106 | related to AP2 9 | ||||
Swissprot | Q8W3M3 | 1e-107 | RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9 | ||||
TrEMBL | A0A178U651 | 1e-104 | A0A178U651_ARATH; RAP2.9 | ||||
STRING | AT4G06746.1 | 1e-105 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT4G06746.1 |
Entrez Gene | 826148 |
iHOP | AT4G06746 |
wikigenes | AT4G06746 |