PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma22g00720.1 | ||||||||
Common Name | ZOSMA_22G00720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C2H2 | ||||||||
Protein Properties | Length: 220aa MW: 24704.6 Da PI: 6.7888 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.1 | 1.7e-06 | 186 | 208 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+ F+ + +Lk+H+++H Zosma22g00720.1 186 YTCVECNAIFTKPAYLKQHMQRH 208 9*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.47E-6 | 138 | 208 | No hit | No description |
SMART | SM00355 | 41 | 140 | 163 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 185 | 209 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.346 | 186 | 209 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0029 | 186 | 208 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 188 | 208 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MEDSQEIAVT AIVVRDPAKD HKRKRSDFEK DAEISPAASS LESDTVFSME VELNASVLKG 60 GSQDPMMRQK IVAESSESAD SELLEEVQEN EVYFEGTTTI SADSKMINSK KNRSHVWEAE 120 KDSNGGDGKH KQSFRDIRRY YCEYCGVCRS KKTLITAHVL SNHKEKIQNK TNDVRDANHG 180 SGGRGYTCVE CNAIFTKPAY LKQHMQRHSI QIILNHYTV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PKM1 | 1e-163 | A0A0K9PKM1_ZOSMR; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17974 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 2e-17 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | Zosma22g00720.1 |