PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma220g00160.1
Common NameZOSMA_220G00160
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family TCP
Protein Properties Length: 284aa    MW: 31413.2 Da    PI: 9.2933
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma220g00160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP122.45e-38642122136
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaess 78 
                        +++d+h ki+T++g+RdRR+Rls ++a +fFdLqd LGfd++s+t++WLl+++k ai  l                   +  ++ e++    
  Zosma220g00160.1  64 NKRRDSHRKISTAQGLRDRRMRLSQDVAQKFFDLQDVLGFDRPSETVDWLLTKSKYAIESLSTPcpfpcpcspcggsrsqT--TKAESS---- 150
                       579**********************************************************88876666655554433221..111111.... PP

               TCP  79 sssasnsssg.............kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                                +               ++s   +  +++  +++  l+ke rakar+rar+rt+ek ++k+++
  Zosma220g00160.1 151 ---------TsecevkgprksstTVRRSPRVNGTRKSIVSANPVLQKELRAKARERARKRTTEKGMLKTST 212
                       .........122333344443434444444555555556667999*******************9998765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-3465206IPR005333Transcription factor, TCP
PROSITE profilePS5136927.6966124IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.364188205IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MFSSRWLQTS SSSSQNPTQL FPTFDPSDGF NDLFNVIRLA PGDNGNDPVL IPCTGAGKRT  60
PEANKRRDSH RKISTAQGLR DRRMRLSQDV AQKFFDLQDV LGFDRPSETV DWLLTKSKYA  120
IESLSTPCPF PCPCSPCGGS RSQTTKAESS TSECEVKGPR KSSTTVRRSP RVNGTRKSIV  180
SANPVLQKEL RAKARERARK RTTEKGMLKT STATRVEEDQ TLLLEHYGDP SLEMMITSML  240
NNGSSLGYTT TASTSASNNT TNINVDSINL CQEYYPNLLP QWD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PJL60.0A0A0K9PJL6_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-20TCP domain protein 12