PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma218g00180.1
Common NameZOSMA_218G00180
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family CO-like
Protein Properties Length: 392aa    MW: 43373 Da    PI: 4.902
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma218g00180.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box217.2e-07343438
          zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                      r C+ ++  ++ lfC+ ++ +lC  C +++H g       H+
  Zosma218g00180.1  3 RECDFCKVSPAFLFCRADSAFLCSHCDSNIH-GanklasrHE 43
                      78*****999*********************.5466777776 PP
2zf-B_box292.2e-094490242
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      + ++C+ +e+ ++ + C+ +   lC++C    H+       H++vp+
  Zosma218g00180.1 44 RVWICEVCEQAPAAFTCKADAAVLCATCDADVHSAnllsvrHERVPI 90
                      5689*****************************66999999*99997 PP
3CCT69.96.3e-24312355144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea+++RY+eKrktR+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Zosma218g00180.1 312 REARVMRYREKRKTRRFEKTIRYASRKAYAETRPRIKGRFAKRT 355
                       9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003369.7E-11147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.04147IPR000315B-box-type zinc finger
PfamPF006432.6E-5344IPR000315B-box-type zinc finger
CDDcd000211.35E-7547No hitNo description
PROSITE profilePS5011910.6654390IPR000315B-box-type zinc finger
PfamPF006431.3E-74490IPR000315B-box-type zinc finger
CDDcd000218.29E-94690No hitNo description
SMARTSM003363.6E-84890IPR000315B-box-type zinc finger
PROSITE profilePS5101716.916312354IPR010402CCT domain
PfamPF062036.8E-18312354IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MARECDFCKV SPAFLFCRAD SAFLCSHCDS NIHGANKLAS RHERVWICEV CEQAPAAFTC  60
KADAAVLCAT CDADVHSANL LSVRHERVPI TPFFDSPSPN MTRKGRTTGL IRKNRCQGDH  120
HDVGDVDEEE VEDDDDDNEE EEECNNEDGN KEESDAVAEA EAASWLIPND GGGVHSNVEI  180
KYEMKPSTER MAEQYYFPEV DPYLDLDYAA SMDPKFYRSA AADSIVPVQN RNITAPAAGM  240
AVGVAAMHHH HPPPFISNIS DRSYDIDITR SSNHSYSYAP SVSHSMSSSE TGVVPDGAMA  300
SASASAVVGM DREARVMRYR EKRKTRRFEK TIRYASRKAY AETRPRIKGR FAKRTEMEDV  360
MGDDDMYPPS QGNATASLIV DRPNYGLVPS F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008789696.11e-101zinc finger protein CONSTANS-LIKE 4
TrEMBLA0A0K9PK190.0A0A0K9PK19_ZOSMR; CONSTANS-like protein
STRINGXP_008789696.11e-100(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.24e-47CONSTANS-like 3