PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G24790.2 | ||||||||
Common Name | ATCOL3, BBX4, COL3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | DBB | ||||||||
Protein Properties | Length: 220aa MW: 24305.4 Da PI: 5.087 | ||||||||
Description | CONSTANS-like 3 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 30.3 | 8.5e-10 | 5 | 47 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 r C+ +++ ++lfC+ + +lC dC ++H H++ AT2G24790.2 5 SRLCDSCKSTAATLFCRADAAFLCGDCDGKIHTAnklasrHER 47 689******99*********************55667777765 PP | |||||||
2 | zf-B_box | 28.4 | 3.3e-09 | 48 | 93 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + C+ +e+ +++ C+ + lC +C +H+ H++vp+ AT2G24790.2 48 VWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSAnplsrrHERVPI 93 689*****************************66899999*99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.765 | 3 | 50 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.8E-15 | 3 | 50 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-7 | 5 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.72E-9 | 6 | 50 | No hit | No description |
PROSITE profile | PS50119 | 11.049 | 46 | 93 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-7 | 48 | 93 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.73E-10 | 49 | 93 | No hit | No description |
SMART | SM00336 | 2.4E-11 | 51 | 93 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0010099 | Biological Process | regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence Send to blast |
MASSSRLCDS CKSTAATLFC RADAAFLCGD CDGKIHTANK LASRHERVWL CEVCEQAPAH 60 VTCKADAAAL CVTCDRDIHS ANPLSRRHER VPITPFYDAV GPAKSASSSV NFVDEDGGDV 120 TASWLLAKEG IEITNLFSDL DYPKIEVTSE ENSSGNDGVV PVQNKLFLNE DYFNFDLSAS 180 KISQQGFNFI NQTVRISLYL LKLPWIWKIF RSRSESLDLI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.24362 | 0.0 | bud| cell culture| flower| leaf| root| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 30682554 | 0.0 | ||||
Genevisible | 263537_at | 1e-161 | ||||
Expression Atlas | AT2G24790 | - | ||||
AtGenExpress | AT2G24790 | - | ||||
ATTED-II | AT2G24790 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G24790.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G24790 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006585 | 0.0 | AC006585.8 Arabidopsis thaliana chromosome 2 clone F27C12 map mi238, complete sequence. | |||
GenBank | AC007266 | 0.0 | AC007266.5 Arabidopsis thaliana chromosome 2 clone F27A10 map mi238, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_973530.1 | 1e-163 | CONSTANS-like 3 | ||||
Swissprot | Q9SK53 | 1e-144 | COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3 | ||||
TrEMBL | Q3EBU4 | 1e-162 | Q3EBU4_ARATH; CONSTANS-like 3 | ||||
STRING | AT2G24790.1 | 1e-142 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT2G24790.2 |
Entrez Gene | 817016 |
iHOP | AT2G24790 |
wikigenes | AT2G24790 |