PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma214g00240.1
Common NameZOSMA_214G00240
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 272aa    MW: 30684.6 Da    PI: 10.0459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma214g00240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.32.4e-07136181555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       ++++ r RR++i ++   L +l+P+      +++s +++Le+A +Y+k L+
  Zosma214g00240.1 136 ASKAARVRRKNISDRTTILASLMPWE-----RRMSISTMLEEAKKYVKFLE 181
                       567889*******************9.....79***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.417131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.33E-6133184No hitNo description
Gene3DG3DSA:4.10.280.105.7E-7133185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-8133188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-6137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-4137181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MEQGFMNRAM PMPMLASSPT VYQLAEEEWS LHARCIASGL PPFPTSMCGY SSQRRHLLST  60
EIGPLFPSDQ SSSFTLDANP LQQQMTMTMM IPLDRIQMKP PTVPFSSSPS RSVQKRKLPA  120
AFWNGTEIFN PAKNPASKAA RVRRKNISDR TTILASLMPW ERRMSISTML EEAKKYVKFL  180
EAQVMAVQYM PVESYFHCDS PISGAGGSRQ QLMQVLVNSR IVQERLYDKG LCVYSVEQMI  240
LMRRIVEREM VVQKQQHMAQ KQSTGSSTTT S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PKD70.0A0A0K9PKD7_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2498544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.12e-22bHLH family protein