PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma210g00080.1
Common NameZOSMA_210G00080
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family LBD
Protein Properties Length: 193aa    MW: 20953.4 Da    PI: 8.4674
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma210g00080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.55.7e-4435133199
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrrkC +dCv+apyfp ++p+kfa vhk+FGasnv+kll++l++ +reda++sl+yeA++r+rdP+yG+vgvi+ l+qql+ql+ +
  Zosma210g00080.1  35 PCAACKFLRRKCHPDCVFAPYFPPDNPQKFAHVHKVFGASNVTKLLNELSPYQREDAVNSLAYEADMRLRDPIYGCVGVISILEQQLRQLQID 127
                       7******************************************************************************************** PP

            DUF260  94 lallke 99 
                       la++k 
  Zosma210g00080.1 128 LARAKY 133
                       *99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.50234135IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-4335131IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009799Biological Processspecification of symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009954Biological Processproximal/distal pattern formation
GO:0048441Biological Processpetal development
GO:0005654Cellular Componentnucleoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MRSSASSVTS SSSISTASAF TSSSSSTSSP SPTSPCAACK FLRRKCHPDC VFAPYFPPDN  60
PQKFAHVHKV FGASNVTKLL NELSPYQRED AVNSLAYEAD MRLRDPIYGC VGVISILEQQ  120
LRQLQIDLAR AKYELSKYQT AAATPGVDFF GLGRNNYETA EIGSGNFGFQ FQKPSTTTGV  180
IDEKQNFRPS LN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-55251381114LOB family transfactor Ramosa2.1
5ly0_B5e-55251381114LOB family transfactor Ramosa2.1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269|PubMed:17209126}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00211DAPTransfer from AT1G65620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020194937.15e-70LOB domain-containing protein 6-like
RefseqXP_020194938.15e-70LOB domain-containing protein 6-like
SwissprotQ32SG32e-70LBD6_MAIZE; LOB domain-containing protein 6
TrEMBLA0A0K9PKM61e-140A0A0K9PKM6_ZOSMR; Protein LATERAL ORGAN BOUNDARIES
STRINGEMT249312e-69(Aegilops tauschii)
STRINGMLOC_72525.12e-69(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22673895
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.43e-55LBD family protein