PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma20g00940.1
Common NameZOSMA_20G00940
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family G2-like
Protein Properties Length: 341aa    MW: 38173.9 Da    PI: 9.805
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma20g00940.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.23.3e-32173226255
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Zosma20g00940.1 173 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 226
                      9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.97E-15170226IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28171226IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-24173226IPR006447Myb domain, plants
PfamPF002494.5E-7174225IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MPVLQEVYAG EKATTTPDLA LRISLPDGTS ESERESKNPW KYRQNSVRGE KRDDGSSWGL  60
VEFPLFNLPE MSGTDYQIPW RPQMSIPPQQ PQIINLDSRR PIKGVPVYNY NGFHHHQKIS  120
PYSYSWSSSS STSSSSPKHR AISLAPTRLN SGLYSDNTMV TSRYTSKKIV RAPRMRWTSS  180
LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH LQMYRTVKTT DKPVVSSDGS  240
GAEEDLMSSF SDMADLKLRG SIELQGPNNP PSSTTLSSRI AWLQTNSDAI EGVTSSTNFI  300
SHSIDENRRI SQKKDLLTSR LMEHKIPSLE FTLGRSNWQA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-16174228458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-16174228458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-16174228458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-16174228458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-16174228458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-16174228458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-16174228458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-16174228458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021660390.15e-56transcription repressor KAN1-like isoform X2
TrEMBLA0A0K9PKZ20.0A0A0K9PKZ2_ZOSMR; Putative transcription factor KAN3
STRINGSolyc05g051060.2.16e-55(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.11e-45G2-like family protein