PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma20g00430.1
Common NameZOSMA_20G00430
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GATA
Protein Properties Length: 263aa    MW: 29224.4 Da    PI: 9.3091
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma20g00430.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.5e-19140173134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs C+ttkTplWR gp+g+k+LCnaCG+++rk +
  Zosma20g00430.1 140 CSDCNTTKTPLWRGGPQGPKSLCNACGIRQRKAR 173
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.9E-18134186IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-13136178No hitNo description
Gene3DG3DSA:3.30.50.101.2E-15138174IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.453138170IPR000679Zinc finger, GATA-type
CDDcd002021.37E-12139171No hitNo description
PROSITE patternPS003440140165IPR000679Zinc finger, GATA-type
PfamPF003209.5E-17140173IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009735Biological Processresponse to cytokinin
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MTPNRGNQYF PFPLLEEKPQ QQSNNSMYRF QTFQQASSFT RPVSSQASLQ PEYNQKSSDD  60
YAEQLSYYVD GSPHLEQTKS ISEDANHGSG KWVSSKMRFM RKLRNIRSNA QQQAQGDSRT  120
NGNSRCSNIN FNDTIVIRVC SDCNTTKTPL WRGGPQGPKS LCNACGIRQR KARKAMAAEA  180
LDITTTNKDK QITSKICNDH QLCSESPHKK RCSSTSSTST TSTSKFFSSE SNDDLSINLN  240
RGSDVKEAAR LLMALSSDII CG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PMW30.0A0A0K9PMW3_ZOSMR; GATA transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.12e-24cytokinin-responsive gata factor 1