PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma20g00250.1 | ||||||||
Common Name | ZOSMA_20G00250 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 243aa MW: 28277.2 Da PI: 4.8765 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.1 | 8.3e-20 | 67 | 120 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q+e Le+ F +++ +++ +LAk lgL+ rqV +WFqNrRa++k Zosma20g00250.1 67 KKRRLTSTQVESLEKSFDTGNKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARWK 120 56789************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.8 | 1.2e-42 | 66 | 157 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl++ qv++LE+sF++ +kLep+rK +la++Lglqprqva+WFqnrRAR+ktkqlE+dye+Lk++yd lk+++++L++e e+Lr+e++ Zosma20g00250.1 66 EKKRRLTSTQVESLEKSFDTGNKLEPDRKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLERDYETLKQNYDDLKTNHDSLHEEREKLRTEVM 157 69**************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.21E-19 | 57 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.925 | 62 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-19 | 65 | 126 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.92E-15 | 67 | 123 | No hit | No description |
Pfam | PF00046 | 4.4E-17 | 67 | 120 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-20 | 68 | 129 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.5E-6 | 93 | 102 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.5E-6 | 102 | 118 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-16 | 122 | 163 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAASGSGSGF KGSEGIQSLF HDSRSMSTNL EDIHEGEGNR SSFFHNIDME ECMNYEDYEE 60 GFYHPEKKRR LTSTQVESLE KSFDTGNKLE PDRKIQLAKD LGLQPRQVAI WFQNRRARWK 120 TKQLERDYET LKQNYDDLKT NHDSLHEERE KLRTEVMVLK EKLGKSENEN VNFKTEEHET 180 AVEEEKPKST VVCKQEEICS TNSVVMDSDV LQNLNMQKID RKGNSRGFGF LEEDTDLWSW 240 NY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 114 | 122 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021287102.1 | 2e-57 | homeobox-leucine zipper protein HAT5-like | ||||
Swissprot | A2YWC0 | 3e-44 | HOX20_ORYSI; Homeobox-leucine zipper protein HOX20 | ||||
Swissprot | Q6Z248 | 3e-44 | HOX20_ORYSJ; Homeobox-leucine zipper protein HOX20 | ||||
TrEMBL | A0A0K9PMU3 | 1e-180 | A0A0K9PMU3_ZOSMR; Homeobox-leucine zipper-like protein | ||||
STRING | POPTR_0015s07640.1 | 1e-56 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16055 | 7 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 8e-45 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | Zosma20g00250.1 |
Publications ? help Back to Top | |||
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