PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma207g00070.1
Common NameZOSMA_207G00070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 336aa    MW: 36739 Da    PI: 5.1195
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma207g00070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.6e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+d+++  G g+W++ ++  g+ R++k+c++rw +yl
  Zosma207g00070.1 14 KGPWTPEEDKILIDYIQSNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
                      79******************************99************97 PP
2Myb_DNA-binding53.36.3e-1767112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T++E++ +v++++  G++ W+tIa+ ++ gRt++++k++w+++l
  Zosma207g00070.1  67 RGPFTPDEQKSIVQLHAIVGNK-WSTIAAQLP-GRTDNEVKNYWNTHL 112
                       89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.8E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.746961IPR017930Myb domain
SuperFamilySSF466895.24E-3011108IPR009057Homeodomain-like
SMARTSM007174.7E-131363IPR001005SANT/Myb domain
PfamPF002491.2E-151461IPR001005SANT/Myb domain
CDDcd001673.73E-101661No hitNo description
PROSITE profilePS5129425.40862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.6E-2765117IPR009057Homeodomain-like
SMARTSM007174.0E-1566114IPR001005SANT/Myb domain
PfamPF002494.1E-1567112IPR001005SANT/Myb domain
CDDcd001671.32E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRAPCCEKE GLKKGPWTPE EDKILIDYIQ SNGHGSWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGPF TPDEQKSIVQ LHAIVGNKWS TIAAQLPGRT DNEVKNYWNT HLKKRLVKMG  120
IDPDTCSPTA NADVPSAGFG GDGGGDGDLL SSKAATRHMA QWESARLEAE ARLAKESLIF  180
SCSSASCDTE SNTGPDKMEA DFFLRIWNSD VGRAFRSKDE RMAPLPLPSS TSSSSYSSSL  240
SSPLTTTTSS TMATETTSEG EDESYQIFLD FAAVDVDDSM AMRRLYPNTQ LGSFSLFDMA  300
GDEMDEGNCS TLEHVDVFKH NHLQLLELSA STPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_029116836.11e-114LOW QUALITY PROTEIN: transcription factor MYB41-like
SwissprotQ9M2D91e-103MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A0K9PNG50.0A0A0K9PNG5_ZOSMR; Myb domain protein 17
STRINGXP_008794182.11e-105(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54093157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.16e-89myb domain protein 17