PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma203g00360.1
Common NameZOSMA_203G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family DBB
Protein Properties Length: 294aa    MW: 32627.8 Da    PI: 6.3816
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma203g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89.1e-08443538
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                       C+ ++++e++ fC  ++  lCe+C    H+       H+
  Zosma203g00360.1  4 QCDVCKKEEASVFCCADEASLCETCDRRVHRAnklaekHR 43
                      6*****************************7677777776 PP
2zf-B_box292.2e-095594239
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                      + +kC+ +++k++ lfC++++  lC+dC  ++H    Ht+
  Zosma203g00360.1 55 QTPKCDVCQDKRAFLFCQEDRAILCRDCDGSIHAAneHTM 94
                      6789*****************************6577886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.552147IPR000315B-box-type zinc finger
CDDcd000211.08E-7347No hitNo description
SMARTSM003362.8E-9447IPR000315B-box-type zinc finger
PfamPF006437.6E-6444IPR000315B-box-type zinc finger
SMARTSM003367.0E-1454101IPR000315B-box-type zinc finger
PROSITE profilePS5011910.29654101IPR000315B-box-type zinc finger
PfamPF006433.5E-75694IPR000315B-box-type zinc finger
CDDcd000215.65E-957101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRIQCDVCKK EEASVFCCAD EASLCETCDR RVHRANKLAE KHRRFSLLYP ITPDQTPKCD  60
VCQDKRAFLF CQEDRAILCR DCDGSIHAAN EHTMKHSRFL LTGVKLSSTA TPVGIDMPQE  120
TENKKMGQKK QYKQTVRTQS NEEKKERKSG DVTTTITTTS CGGGICVDSS SISDYLINTL  180
PGWCVDDLFL DDLTPSSSPY LPPSLGAIDK MGIEGGEFLQ WSVPQVLQPP PAPSLQTQTG  240
NICFQTFHDN NSGISSTPGQ HQWNLSDDGF IVPQIDVSQL PLSNKKSRNL WFT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PLS20.0A0A0K9PLS2_ZOSMR; Zinc finger protein CONSTANS-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23923679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.19e-62salt tolerance homolog2