PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma203g00250.1
Common NameZOSMA_203G00250
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family SRS
Protein Properties Length: 376aa    MW: 39252.3 Da    PI: 8.4257
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma203g00250.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702215.21.5e-661322983154
            DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa...............aeaaskrkrelks 80 
                        g++sCqdCGnqakkdC h+RCRtCCksr++ C thvkstWvpaakrrerq+ql ++++ +++++               + +askr+re ++
  Zosma203g00250.1 132 GGGMSCQDCGNQAKKDCIHMRCRTCCKSRNLPCPTHVKSTWVPAAKRRERQHQLMSSMQMQQQHHssprllrscggggsgSGEASKRPREITT 224
                       5789*************************************************99988877777779**********99989999*****999 PP

            DUF702  81 kkqsalsstklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                        + + l++t +++++s  +  + ++P+evss+a+frcv+vs++dd++e++aYqtav+igGh+fkGiLydqG+++
  Zosma203g00250.1 225 LACTRLANTAVTTSNSGGMEIVGTFPSEVSSPAIFRCVKVSAMDDADEQYAYQTAVNIGGHTFKGILYDQGTDS 298
                       999999999999999998888899***********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051426.9E-64134297IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016234.8E-26136178IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.6E-26249295IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MAGFSLGGGN NNSSSRSNQQ QQPPAEDQIP PENLFFYHSA AAGSARNEEI TTTYAKGFEL  60
WQQHQHHTTQ QHLHHQQQQR HHQFTLYSSG PPGGLGIFGD DPLGGVGIGP SSIVVGSGSG  120
GSSSGRGMRG TGGGMSCQDC GNQAKKDCIH MRCRTCCKSR NLPCPTHVKS TWVPAAKRRE  180
RQHQLMSSMQ MQQQHHSSPR LLRSCGGGGS GSGEASKRPR EITTLACTRL ANTAVTTSNS  240
GGMEIVGTFP SEVSSPAIFR CVKVSAMDDA DEQYAYQTAV NIGGHTFKGI LYDQGTDSQY  300
SGVGGGGHRG DTSSSSPAAI GSSSTAVASA STSAAAAAAA AAASAVPTLM DPSSYYPTPL  360
NSFMSGTQFF PHPRP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00613PBMTransfer from AT3G51060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271515.15e-94PREDICTED: protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A0K9PLG50.0A0A0K9PLG5_ZOSMR; Lateral root primordium (LRP) protein-related
STRINGXP_010271515.12e-93(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135435124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66350.12e-57Lateral root primordium (LRP) protein-related