PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma1g01340.1 | ||||||||
Common Name | ZOSMA_1G01340 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | C3H | ||||||||
Protein Properties | Length: 260aa MW: 29939.3 Da PI: 8.9014 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.9 | 2.7e-06 | 85 | 103 | 8 | 25 |
GGGGTS.--TTTTT-SS-S CS zf-CCCH 8 ffartG.tCkyGdrCkFaH 25 +++ +G C+yG++C F H Zosma1g01340.1 85 NWYNSGkDCPYGSKCAFLH 103 5888888************ PP | |||||||
2 | zf-CCCH | 24.3 | 5.5e-08 | 145 | 169 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k ++C ++ rtG C +G++C +aHg Zosma1g01340.1 145 KKKICFNWTRTGSCTFGNNCLYAHG 169 778999******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.3E-7 | 32 | 67 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.803 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.51 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.183 | 78 | 106 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.49 | 79 | 105 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 81 | 107 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-6 | 82 | 105 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-8 | 142 | 174 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.962 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-5 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-6 | 145 | 169 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-10 | 145 | 176 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MQPITRSTMT TPLIRQHPPA FQSNNSSNEN NRSLFYKTRF CDRFKAGCCP LRSEDCSYAH 60 EASDLHDPPD NWHDKANWRP QKFCNWYNSG KDCPYGSKCA FLHLGQEKQL LNGHSRFQEP 120 SNIISIETNK FSSEINGEQR PLPTKKKICF NWTRTGSCTF GNNCLYAHGH TDQRNPSSST 180 EAEGPRGGGG LRVSVSDLAN ACRKDNDEKE RPAYNSKRVR EREFEYNHRK KNKTELAVNM 240 EYINSKCIKW RSQIYADWI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 230 | RVREREFEYNHRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K9PMH4 | 0.0 | A0A0K9PMH4_ZOSMR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 7e-18 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma1g01340.1 |