PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma19g00150.1 | ||||||||
Common Name | ZOSMA_19G00150 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | G2-like | ||||||||
Protein Properties | Length: 109aa MW: 12555.3 Da PI: 10.4303 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.9 | 4.6e-33 | 38 | 91 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG+++AtPk +l+lm+v+gLt++h+kSHLQ+YR+ Zosma19g00150.1 38 PRLRWTPDLHRCFVSAIEKLGGQDNATPKLVLQLMEVEGLTISHIKSHLQMYRS 91 8****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.598 | 34 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-32 | 34 | 94 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.86E-17 | 36 | 94 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.0E-25 | 38 | 92 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.8E-9 | 39 | 90 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MEDQKKNKKK KMCKEAREDQ SSTGKNGGVR QYIRSKVPRL RWTPDLHRCF VSAIEKLGGQ 60 DNATPKLVLQ LMEVEGLTIS HIKSHLQMYR STRNDMNRQA DQTRDDQP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-22 | 39 | 93 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-22 | 39 | 93 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-22 | 39 | 93 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-22 | 39 | 93 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-22 | 39 | 93 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-22 | 39 | 93 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-22 | 39 | 93 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-22 | 39 | 93 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-22 | 39 | 93 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-22 | 39 | 93 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-22 | 39 | 93 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-22 | 39 | 93 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016574578.1 | 3e-44 | PREDICTED: putative Myb family transcription factor At1g14600 isoform X1 | ||||
Swissprot | Q700D9 | 1e-31 | MYBF_ARATH; Putative Myb family transcription factor At1g14600 | ||||
TrEMBL | A0A0K9PMY6 | 2e-75 | A0A0K9PMY6_ZOSMR; MYB transcription factor-like | ||||
STRING | XP_008805079.1 | 3e-42 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7610 | 29 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02060.1 | 8e-35 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Zosma19g00150.1 |