PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma199g00100.1 | ||||||||
Common Name | ZOSMA_199G00100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 24342.4 Da PI: 9.6676 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.6 | 1.9e-17 | 73 | 127 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k+ ++tkeq + Lee F++n++++ +++e L kl+L rqV vWFqNrRa+ k+ Zosma199g00100.1 73 KKLRLTKEQSRLLEESFKQNQTLNLKQKETLGLKLKLRPRQVEVWFQNRRARTKQ 127 67789***********************************************996 PP | |||||||
2 | HD-ZIP_I/II | 107 | 1.4e-34 | 73 | 160 | 2 | 90 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 kk+rl+keq++lLEesF+++++L+ ++K++l +L+l+prqv+vWFqnrRARtk+kq+ ++y++L++ y +l+een+rL+keve Lr + Zosma199g00100.1 73 KKLRLTKEQSRLLEESFKQNQTLNLKQKETLGLKLKLRPRQVEVWFQNRRARTKQKQTGMEYDQLRQFYGSLTEENRRLQKEVEYLR-A 160 9************************************************************************************99.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-16 | 62 | 127 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.41E-19 | 62 | 129 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.151 | 68 | 128 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-14 | 70 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.11E-13 | 71 | 129 | No hit | No description |
Pfam | PF00046 | 6.4E-15 | 72 | 127 | IPR001356 | Homeobox domain |
SMART | SM00340 | 6.2E-10 | 128 | 171 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MNDPSCLELT MAVPGLSTSS GSEGGGGGFN QFNNGMRDLD MNRPASASGF EEDYQTVVVE 60 NGHDISESSN RPKKLRLTKE QSRLLEESFK QNQTLNLKQK ETLGLKLKLR PRQVEVWFQN 120 RRARTKQKQT GMEYDQLRQF YGSLTEENRR LQKEVEYLRA LHTHYEIPPS SLTMCPRCEK 180 VTTTAAAAAT MGKQIQNKSA GATTNFVGSR RPSSATC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 128 | RRARTKQKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. | |||||
UniProt | Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010924194.1 | 4e-68 | LOW QUALITY PROTEIN: homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q0JKX1 | 6e-64 | HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q9XH38 | 6e-64 | HOX3_ORYSI; Homeobox-leucine zipper protein HOX3 | ||||
TrEMBL | A0A0K9PNC8 | 1e-161 | A0A0K9PNC8_ZOSMR; Homeobox-leucine zipper protein HOX3 | ||||
STRING | XP_008800935.1 | 2e-65 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6826 | 35 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 7e-48 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Zosma199g00100.1 |