PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma198g00270.1
Common NameZOSMA_198G00270
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 381aa    MW: 41825.7 Da    PI: 7.3026
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma198g00270.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-09135155526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        C++f++ G Ck+Gd C FaHg
  Zosma198g00270.1 135 ACPDFRK-GNCKRGDACEFAHG 155
                       7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-6130156IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976131157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-6134157IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-7135155IPR000571Zinc finger, CCCH-type
SMARTSM0035611165188IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.188165189IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MMIGERSTNS HSHNLHPHHL MSPAIQVPTW PLYDDPPTPT AFSSYGADLS SYVLGDATLT  60
SLRRFLPSND ASNITDDDPD SAVDAYSCDE FRIYEFKVRR CPRGRSHDWT ECPYAHPGEK  120
ARRRDPRKYH YSGTACPDFR KGNCKRGDAC EFAHGVFECW LHPVRYRTQP CKDGVNCRRK  180
VCFFAHTPEQ LRVLPQHNSP TRGNSGGGSG LSDCYDGSPL RQQTSSVHVG PSLDSYLMSN  240
ALLSSSPTST LMSPPTSPPL SPSEGVYGSP SMNELLMSMR QLNLSKAVSR SWGISGSPPS  300
IAGCSLRYGG FNTPTRLGVL GNGGGGLFEW EEPMEWVQSG KDLRAKMAEK ISKVRSLNTT  360
DDDVSGSVTP DVDWVSDLVR *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010925500.11e-124zinc finger CCCH domain-containing protein 2
SwissprotQ6L4N41e-95C3H35_ORYSJ; Zinc finger CCCH domain-containing protein 35
TrEMBLA0A0K9PQY20.0A0A0K9PQY2_ZOSMR; Zinc finger CCCH domain-containing protein
STRINGGSMUA_Achr10P27910_0011e-116(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-91C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]