PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma193g00190.1
Common NameZOSMA_193G00190
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 667aa    MW: 73391.5 Da    PI: 7.5288
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma193g00190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH247e-08262282526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f++ G C+ Gd C +aHg
  Zosma193g00190.1 262 PCPEFRK-GSCRNGDACEYAHG 282
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484038.71E-1350134IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.1E-1250136IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.72452135IPR020683Ankyrin repeat-containing domain
SMARTSM002483.25285IPR002110Ankyrin repeat
PfamPF127961.0E-652124IPR020683Ankyrin repeat-containing domain
CDDcd002045.11E-1354135No hitNo description
PROSITE profilePS5008810.07292127IPR002110Ankyrin repeat
SMARTSM002480.0392124IPR002110Ankyrin repeat
SMARTSM003566.3E-5257283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4261284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056262284IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-5262282IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.653292316IPR000571Zinc finger, CCCH-type
SMARTSM0035636292315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MESPTTLDPT LLLEYAASDD LVSFRKAVEM DFRTIDVASK WYGRWSSQMG FQERTPLMVA  60
ALYGSVSVLE YILSFETTFP GTIHVNRRCG SDNSSALHLA VSGASPVYFK IVKLLLDAKA  120
DVSLLDSSGR TPIHVVPRQK PCLGKMKSAV ELALGGGHGY FDGLEGEIPT STPSLVNPKQ  180
QKVTSPGAGG LGLGEKKEYP VDATLPDIKS GVCGTDEFRM YTFKVKPCSR AYSHDWTECP  240
FVHPGENARR RDPRKYHYSC VPCPEFRKGS CRNGDACEYA HGVFESWLHP AQYRTRLCKD  300
ETGCNRRVCF FAHKTEELRP LYNSVVSSPR SPANLPSLDL SSAAAMLMNQ QTPLSPSSSS  360
ALAAAVWLNQ NTGTPTSQLP SSRLKSAMNA RDMDYEFDLL GLDGSAKKQV QNQNFIDEIG  420
NLSSRSMNMD YGVDFFGSPE SNPLSPLTNH SLKQSPSLSQ FQSPPSSIQK QLLSNYNNGG  480
GNIPSSPSTR SSSPSFGLDH KLASAIINSR ASSFAKRSQS FVDRGVGNRQ VIGSTQSQAN  540
SDWGSPSGKL DWGIQGEELN KLRKSASFAF RKNEKAIPAS QLDDEPDVSW VQSIVKDGPM  600
FENGYVEDER EKMQRNQQQM MMLMMMNKKK QFHLNSGAGE FHPGDSFASW NPDQIQIHLD  660
QEQMVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN9443751e-138JN944375.1 Zostera marina microsatellite Pzm9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010937855.10.0zinc finger CCCH domain-containing protein 33
TrEMBLA0A0K9PNZ20.0A0A0K9PNZ2_ZOSMR; Zinc finger CCCH domain-containing protein
STRINGXP_006488539.10.0(Citrus sinensis)
STRINGXP_006425080.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-145C3H family protein