PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zosma18g01090.1 | ||||||||
Common Name | ZOSMA_18G01090 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
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Family | NAC | ||||||||
Protein Properties | Length: 315aa MW: 36025 Da PI: 6.6253 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180.8 | 3.5e-56 | 16 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee++++yL ++++++ +++ +++ e+d++k+ePwdLp k++ +ekewyfF++rd+ky+tg r+nrat+sgyWkatgkdke+++ Zosma18g01090.1 16 LPPGFRFHPTDEEIITHYLFERIKDSGFTA-TAMGEADLNKCEPWDLPGKATMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYK 108 79*************************999.88***************888899**************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 kg lvg+kktLvfykgrapkgekt+Wvmheyrle Zosma18g01090.1 109 GKGYLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 143 *********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.37E-63 | 13 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.909 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.8E-29 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MTSTTAKKVN ECSIDLPPGF RFHPTDEEII THYLFERIKD SGFTATAMGE ADLNKCEPWD 60 LPGKATMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK GYLVGMKKTL 120 VFYKGRAPKG EKTNWVMHEY RLESKSSFWK LPKSAKDEWV VCRVLHKKSA GISNRIAPDF 180 NFSTMYNDDG RNFGDGSSTF HQLQTTGATP SSSMDQYQYS YDDYPFQLQT LPVEEDGFKT 240 TTTTNNDNDN YYHYYDCSNM FPTPGTGSTP VIRRHCKTEQ YSSEIGYRSI DNNYDDAQVS 300 SSSTAMVDFD NLLN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-54 | 14 | 171 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-54 | 14 | 171 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-54 | 14 | 171 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-54 | 14 | 171 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-54 | 14 | 171 | 18 | 172 | NAC domain-containing protein 19 |
3swm_B | 5e-54 | 14 | 171 | 18 | 172 | NAC domain-containing protein 19 |
3swm_C | 5e-54 | 14 | 171 | 18 | 172 | NAC domain-containing protein 19 |
3swm_D | 5e-54 | 14 | 171 | 18 | 172 | NAC domain-containing protein 19 |
3swp_A | 5e-54 | 14 | 171 | 18 | 172 | NAC domain-containing protein 19 |
3swp_B | 5e-54 | 14 | 171 | 18 | 172 | NAC domain-containing protein 19 |
3swp_C | 5e-54 | 14 | 171 | 18 | 172 | NAC domain-containing protein 19 |
3swp_D | 5e-54 | 14 | 171 | 18 | 172 | NAC domain-containing protein 19 |
4dul_A | 5e-54 | 14 | 171 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 5e-54 | 14 | 171 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023906757.1 | 1e-100 | NAC domain-containing protein 87-like | ||||
TrEMBL | A0A0K9PPW3 | 0.0 | A0A0K9PPW3_ZOSMR; NAC domain-containing protein 1 | ||||
STRING | EOY10726 | 5e-98 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 2e-98 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Zosma18g01090.1 |