PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma185g00310.1

Common Name

ZOSMA_185G00310

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C3H

Protein Properties

Length: 754aa MW: 81974.7 Da PI: 6.8592

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma185g00310.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.4	4.9e-08	319	339	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Zosma185g00310.1 319 PCPDFRK-GACRRGDLCEYAHG 339 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	4.51E-14	53	177	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	1.9E-8	92	165	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.045	96	171	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	2.2E-13	96	175	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.33	96	126	IPR002110	Ankyrin repeat
CDD	cd00204	2.09E-11	98	171	No hit	No description
PROSITE profile	PS50088	10.633	131	166	IPR002110	Ankyrin repeat
SMART	SM00248	0.048	131	163	IPR002110	Ankyrin repeat
SMART	SM00356	1.2E-5	314	340	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.169	319	341	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.6E-5	319	339	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	9.4E-4	319	341	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.1E-4	347	377	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	36	349	372	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 754 aa Download sequence Send to blast
MCTGFDNKKP PSSSSQPLPE FSRSLSNQHS SLKAKVTSAM THLTVETDDS FSTLFELAAN 60 NDLGGFKRSV DRNPLAINEV ELWYGRKKFS NQMVLEQRTS LMVAATYGSL DVLKYIVSVT 120 VSDVNRVCGE DKTTALHCAA SGGSAHAVDA VKILLFAGAD PNIVDVNGLR PCDVIVVSPI 180 LHDVKFKLEN LLGFDGAVHG RDDGIRVSTS TVSSNSPPLS SSPDGDGFPS SDSTTSPEIG 240 KFQVPSELTA PEKKEYPVDP SLPDIKNSIY STDEFRMYSF KVRPCSRAYS HDWTECPFVH 300 PGENARRRDP RKFHYSCVPC PDFRKGACRR GDLCEYAHGV FECWLHPAQY RTRLCKDGTS 360 CNRRVCFFAH TSEELRPLFV STGSAVPSPR STAAAMEMVM NLMPCSPSSI SMMSPSPFNS 420 PMSPSTNGMS PSTGAWPQPN VPTLHLAGGS LQSSRLRSSI HARDIHSDEL SMLQDMDAAQ 480 QQQQLRGEMS CLMSNPGRLS SLSTNRSKAL TPSNLDDLFC AEVASSPRYN SDQGGGGVFS 540 PTHHKSPASF HQFHSQQSML SPINTGHVYS PKNMDNQQQI PSSHSSFLQA NFGSPGRMSP 600 RSMEPLSPIS SRMAGITQRE KLQQLRSMSS RELGTGLSAI VGSPVNSSLS KWGSPSGKLD 660 WSFNGGEEQQ AMRPLRRSNS FEHLVTNGGE EPDFSWVQSL VKEPSMDVVE NSSPVAKNTS 720 GADSNGNSNS QVADDHTVLG AWIEQMHLDQ LAA*

Sequence ? help Back to Top

Protein Sequence Length: 754 aa Download sequence Send to blast

MCTGFDNKKP PSSSSQPLPE FSRSLSNQHS SLKAKVTSAM THLTVETDDS FSTLFELAAN  60
NDLGGFKRSV DRNPLAINEV ELWYGRKKFS NQMVLEQRTS LMVAATYGSL DVLKYIVSVT  120
VSDVNRVCGE DKTTALHCAA SGGSAHAVDA VKILLFAGAD PNIVDVNGLR PCDVIVVSPI  180
LHDVKFKLEN LLGFDGAVHG RDDGIRVSTS TVSSNSPPLS SSPDGDGFPS SDSTTSPEIG  240
KFQVPSELTA PEKKEYPVDP SLPDIKNSIY STDEFRMYSF KVRPCSRAYS HDWTECPFVH  300
PGENARRRDP RKFHYSCVPC PDFRKGACRR GDLCEYAHGV FECWLHPAQY RTRLCKDGTS  360
CNRRVCFFAH TSEELRPLFV STGSAVPSPR STAAAMEMVM NLMPCSPSSI SMMSPSPFNS  420
PMSPSTNGMS PSTGAWPQPN VPTLHLAGGS LQSSRLRSSI HARDIHSDEL SMLQDMDAAQ  480
QQQQLRGEMS CLMSNPGRLS SLSTNRSKAL TPSNLDDLFC AEVASSPRYN SDQGGGGVFS  540
PTHHKSPASF HQFHSQQSML SPINTGHVYS PKNMDNQQQI PSSHSSFLQA NFGSPGRMSP  600
RSMEPLSPIS SRMAGITQRE KLQQLRSMSS RELGTGLSAI VGSPVNSSLS KWGSPSGKLD  660
WSFNGGEEQQ AMRPLRRSNS FEHLVTNGGE EPDFSWVQSL VKEPSMDVVE NSSPVAKNTS  720
GADSNGNSNS QVADDHTVLG AWIEQMHLDQ LAA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009599703.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30-like
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A0K9PSL9	0.0	A0A0K9PSL9_ZOSMR; Zinc finger CCCH domain-containing protein 30
STRING	XP_009599703.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Link Out ? help Back to Top
Phytozome	Zosma185g00310.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]