PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma185g00260.1
Common NameZOSMA_185G00260
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family GeBP
Protein Properties Length: 427aa    MW: 48261.6 Da    PI: 4.6628
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma185g00260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57360.73.9e-19213305397
            DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 
                       f+rlw+ eDe+vl  Gl+++++k gksp++  d + + + +k++ +f++s sql++K + +KkK kk+  +      +s +++++qk++++ k
  Zosma185g00260.1 213 FRRLWTYEDELVLVNGLVEYQEKYGKSPVSagDFSVLANELKGKFQFDYSISQLMNKNKGFKKKVKKNLVN----GYTSSANKDNQKCLDILK 301
                       89************************998889***********************************9999....4557788889******** PP

            DUF573  94 kiWg 97 
                        iW+
  Zosma185g00260.1 302 NIWR 305
                       ***7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.0E-15213304IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MKRIIPSPLP TLPSSDEETD DESSETSRSE DIVAATPPPT TKRKYSSVQA NEPPKSSSTQ  60
TLPVSGMTKK MYTPLRPSPP SESKSDEEES DGESDEETSR SEDIVSTTPP PNKKQKNFSV  120
QENESPKAKS PSTQTLPGSE MEKRTEIPQP PLLPSESKSE GETDDESEET SSSGHMVATT  180
PSPLKKILRS NGKENEPSKP EPSSTVSGSK RPFRRLWTYE DELVLVNGLV EYQEKYGKSP  240
VSAGDFSVLA NELKGKFQFD YSISQLMNKN KGFKKKVKKN LVNGYTSSAN KDNQKCLDIL  300
KNIWRDELEA KFITSSKKQK QRQKKNIVAI LDEVEVAENE ERDIDEDKDK DEDEDEDKDE  360
DEDEDVYILE DIIDKHAEGP FKRKMMKRLM SIDPKTKQHW IDIFMENMNL RGTYEINFMK  420
SLLNKD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9PSL70.0A0A0K9PSL7_ZOSMR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-06DNA-binding storekeeper protein-related transcriptional regulator