PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma17g00070.1
Common NameZOSMA_17G00070
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 213aa    MW: 24697.9 Da    PI: 8.727
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma17g00070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd +lvd++   G g+W+t a + g++Rt+k+c++rw++yl
  Zosma17g00070.1 14 RGSWSVEEDRILVDYISSNGEGRWNTLAICSGLKRTGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding52.98.3e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE+ l+++++ ++G++ W++Ia+ ++ gRt++++k++w++
  Zosma17g00070.1  67 RGNITPEEEILILQLHSRWGNR-WSKIAEDLP-GRTDNEIKNYWRT 110
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.357961IPR017930Myb domain
SuperFamilySSF466895.31E-2913108IPR009057Homeodomain-like
SMARTSM007172.1E-131363IPR001005SANT/Myb domain
PfamPF002494.5E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-211568IPR009057Homeodomain-like
CDDcd001673.12E-91661No hitNo description
PROSITE profilePS5129423.42962116IPR017930Myb domain
SMARTSM007175.6E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2369114IPR009057Homeodomain-like
CDDcd001674.30E-1171110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MNWIGARDDE YLRRGSWSVE EDRILVDYIS SNGEGRWNTL AICSGLKRTG KSCRLRWLNY  60
LRPDIRRGNI TPEEEILILQ LHSRWGNRWS KIAEDLPGRT DNEIKNYWRT RVQKYARIFN  120
CQVNSKKFRD LLQNIWIPCL LQRIVHQDTA ISAAQAQRRR QLLLQLPNTT LSTQESTPSV  180
VEDDVSRGTA GVLCGWYDEL SEALPNLNSE HT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-241211425126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006841613.16e-74transcription factor MYB78
SwissprotQ10MB42e-69MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A0K9PT741e-154A0A0K9PT74_ZOSMR; Myb domain protein 62
STRINGERN032882e-73(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.14e-69myb domain protein 62
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]